View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3931_high_8 (Length: 364)
Name: NF3931_high_8
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 45548306 - 45548645
Alignment:
| Q |
13 |
tgagatccgacttcaagtctgggactgggaggtgcatgtaacgccacctgcgggcgtagttttgtctatttgaaattgtctttggataactcaaatatga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45548306 |
tgagatccgacttcaagtctgggactgggagatgcatgtaacgccacctgcgggcgtagttttgtctatttgaaattgtctttggataactcaaatatga |
45548405 |
T |
|
| Q |
113 |
gaaagtaatgtcgataaatcattttataagaaatgtactcaatttaaaagattttactccatgttaaagttttatagtaacttaataaaggaggaaactc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45548406 |
gaaagtaatgtcgataaatcattttataagaaatgtactcaatttaaaagattttactccatgttaaagttttatagtaacttaataaaggaggaaactc |
45548505 |
T |
|
| Q |
213 |
ttctttctaatgaaaacttgctgttcagaactcctcaccagttacaaacttacaaccaacaaaattgtattgcaaat-acataaaaaacttccatagtat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
45548506 |
ttctttctaatgaaaacttgctgttcagaactcctcaccagttacaaacttacaaccaacaaaattgtattgcaaataacataaaaaactttcatagtat |
45548605 |
T |
|
| Q |
312 |
ggttgtcatattcaatcagcgctccttgaatgtgcaatat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45548606 |
ggttgtcatattcaatcagcgctccttgaatgtgcaatat |
45548645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University