View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3931_high_9 (Length: 360)
Name: NF3931_high_9
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 6975678 - 6976018
Alignment:
| Q |
1 |
gactcttatgataatctaacttattgattagttaacggataaaatccttaattcttaaggatagtattttg-aagtgat----tacacatcgatttaaca |
95 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6975678 |
gactcttatgctaatctaacttattgattagataatggataaaacccttaattcttaaggatagtattttggaagtgatcgattacacatcgatttaaca |
6975777 |
T |
|
| Q |
96 |
atcaatttctcataaatggtgtatagtattatgcatacgagtgacatgataatagaatctccaatttgttttatatatagcaaaattgtttgtaatttga |
195 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6975778 |
atcaatttgtcataaatggtgtatagtattatgcatacgagtgacatgataatagaatctccaatttgttttatatatagcaaaattgtttgtaatttga |
6975877 |
T |
|
| Q |
196 |
aaatcannnnnnnnaactatagccaagtacttcgtacgtattaaattattattaatttcttacacatgagacgtgagagttgagactcgtgtatcaatca |
295 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6975878 |
aaatcattttttttaactatagccaagtacttcgtacgtattaaattattattaatttcttacacatgagacgtgagagttgagactcgtgtatcaatca |
6975977 |
T |
|
| Q |
296 |
taacatcccatgattgttacatgcgttgtgtatttagttag |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6975978 |
taacatcccatgattgttacatgcgttgtgtatttagttag |
6976018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University