View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3931_low_1 (Length: 570)
Name: NF3931_low_1
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 561
Target Start/End: Complemental strand, 98640 - 98099
Alignment:
| Q |
19 |
gggctatgccacatggcttcataaaacttggggtccaaaatatatattttaatatgtaagacactaaagcaacagttatatataattaaaattgaataat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
98640 |
gggctatgccacatggcttcataaaacttggggtccaaaatatatattttaatatgtaagacactaaagcaacagttatatataattaaaattgaataat |
98541 |
T |
|
| Q |
119 |
ttacaaaatgacaacaatgcttcagtggtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtctcctttatgggtgcccctaata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
98540 |
ttacaaaatgacaacaatgcttcagtggtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtcttctttatgggtgcccctaata |
98441 |
T |
|
| Q |
219 |
tggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnnttgtattttgtcccacataacnnnnnnnnn |
318 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
98440 |
tggtccctatttttaagggtgcactcgtagtccccttaaaatgaccttcaatagtatattgcaaaaaaaattgtattttgtcccacataac-aaaaaaaa |
98342 |
T |
|
| Q |
319 |
ngtaagttgaataattacttttacgccctttgatgtaagccataaattctaagtgtagaacataaccattttcttcatctcgttctcaatcttcattgcc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
98341 |
agtaagttgaataattacttttacgccctttgatgtaagccataaattctaagtgtagaacataaccattttcttcatctcgttctcaatcttcattgcc |
98242 |
T |
|
| Q |
419 |
cagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcaccaatcacgacacgctact |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
98241 |
cagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcaccaatcacgacacgctact |
98142 |
T |
|
| Q |
519 |
ccatttaaccaatataatatatgaatttcttgttgtacctttg |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
98141 |
ccatttaaccaatataatatatgaatttcttgttgtacctttg |
98099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 50638856 - 50638791
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaat |
270 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
50638856 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtcccttcaaaatgaccttcaat |
50638791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 50637966 - 50638024
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgac |
263 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
50637966 |
gggtgcctctaacatggtccctatttttaagggtgcactcatggtccctttaaaatgac |
50638024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 97621 - 97654
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggt |
238 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
97621 |
gggtgcccctaatatggtccctatttttaagggt |
97654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 24975424 - 24975388
Alignment:
| Q |
435 |
cttccactctctccgtgttaattgccaaactcatggc |
471 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24975424 |
cttccactctctctatgttaattgccaaactcatggc |
24975388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 202 - 561
Target Start/End: Original strand, 40828778 - 40829144
Alignment:
| Q |
202 |
tatgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnnttgtattttgtcc |
301 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40828778 |
tatgggtgcatctaatatggtccctatttttaagggtgcattcag-gtccccttaaaatgaccttcaatagtagattgaaaaaaaaattgtattttgtcc |
40828876 |
T |
|
| Q |
302 |
cacataacnnnnnnnnnngtaagttgaataattacttttacgccctttgatgtaagccataaattct-aagtgtagaacataaccattttcttcatctcg |
400 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||| |||| | | |||||||||||| ||||||||||||| ||||| |
|
|
| T |
40828877 |
cacataacaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaatttcaagtgtagaacaaaaccattttcttcctctcg |
40828976 |
T |
|
| Q |
401 |
ttctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcac |
500 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40828977 |
ttctcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatactcaccttcac |
40829076 |
T |
|
| Q |
501 |
caatcacgacacgctactccatt-------taaccaatataatatatgaatttcttgttgtacctttg |
561 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40829077 |
caatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
40829144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 40829630 - 40829563
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
272 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
40829630 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
40829563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 45906110 - 45906146
Alignment:
| Q |
46 |
ttggggtccaaaatatatattttaatatgtaagacac |
82 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
45906110 |
ttggggtccaaaatatttatttttatatgtaagacac |
45906146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 201 - 561
Target Start/End: Original strand, 24948394 - 24948765
Alignment:
| Q |
201 |
ttatgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnn-ttgtattttgt |
299 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24948394 |
ttatgggtgcttctaatatggtccctatttttaagggtgcattcatggtccccttaaaatgaccttcaatagtagattgcaaaaaaaaattgtattttgt |
24948493 |
T |
|
| Q |
300 |
cccacataacnnnnnnnnnn--gtaagttgaataattacttttacgccctttgatgtaagccataaa-ttctaagtgtagaacataaccattttcttcat |
396 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||| | ||||||||||||| | |
|
|
| T |
24948494 |
cccacataacaaaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaattccaagtgtagaaaagaaccattttcttcct |
24948593 |
T |
|
| Q |
397 |
ctcgttctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcacct |
496 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24948594 |
ctcgttctcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatactcacct |
24948693 |
T |
|
| Q |
497 |
tcaccaatcacgacacgctactccatt-------taaccaatataatatatgaatttcttgttgtacctttg |
561 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24948694 |
tcaccaatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
24948765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 24949252 - 24949185
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
272 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
24949252 |
gggtggccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
24949185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 204 - 561
Target Start/End: Complemental strand, 11744917 - 11744551
Alignment:
| Q |
204 |
tgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnn-ttgtattttgtccc |
302 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
11744917 |
tgggtgcttctaatatggtccctatttttaagggtgtattcatggtccccttaaaatgaccttcaacagtagattgcaaaaaaaaattgtattttgtccc |
11744818 |
T |
|
| Q |
303 |
acataacnnnnnnnnnngtaagttgaataattacttttacgccctttgatgtaagccataaa-ttctaagtgtagaacataaccattttcttcatctcgt |
401 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
11744817 |
acataacaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaattccaagtgtagaacagaaccattttcttcctctcgc |
11744718 |
T |
|
| Q |
402 |
tctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcacc |
501 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
11744717 |
tttcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggttacttcttctatcaaatactcaccttcacc |
11744618 |
T |
|
| Q |
502 |
aatcacgacacgctactccattt-------aaccaatataatatatgaatttcttgttgtacctttg |
561 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11744617 |
aatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
11744551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 11744065 - 11744132
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
272 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
11744065 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
11744132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 16798290 - 16798225
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaat |
270 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
16798290 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtcccttcaaaatgaccttcaat |
16798225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 16797400 - 16797458
Alignment:
| Q |
205 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgac |
263 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
16797400 |
gggtgcctctaacatggtccctatttttaagggtgcactcatggtccctttaaaatgac |
16797458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 23980061 - 23980025
Alignment:
| Q |
46 |
ttggggtccaaaatatatattttaatatgtaagacac |
82 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
23980061 |
ttggggtccaaaatatatttttttatatgtaagacac |
23980025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University