View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_low_12 (Length: 338)
Name: NF3931_low_12
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 1476768 - 1476466
Alignment:
| Q |
18 |
ttctataaaatgatacatgacatataactttaaacccctattttcttcacatgacaattttgtttattactattaatttttcaagaagtaatcatcatta |
117 |
Q |
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| T |
1476768 |
ttctataaaatgatacatgacatataactttaaacccctattttcttcacatgacaattttgtttattactattattttttcaagaagtaatcatcatta |
1476669 |
T |
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| Q |
118 |
ttggaataatgttagttatttaataactgaaaacaatttatgatcatgttataaattgtttccacgagttgtctaaatagtatcataagtgtttatgcaa |
217 |
Q |
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| T |
1476668 |
ttggaattatgttagttatttaataactaaaaacaatttatgatcatgtcataaattgtttccacgagttgtctaaatagtatcataagtgtttatgcaa |
1476569 |
T |
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| Q |
218 |
taaatatgcccagataagtcaatttaaacactcttatttttaatgttatttgttctatatgttgcaattgctattgtttgtatttggactttgtgactat |
317 |
Q |
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| T |
1476568 |
taaatatgcttagataagtcaatttaaacactcttatttttaatgttatttgttctatatgttgcaattgctattgtttgtatttggactttgtgactat |
1476469 |
T |
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| Q |
318 |
cat |
320 |
Q |
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| T |
1476468 |
cat |
1476466 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 32859970 - 32859933
Alignment:
| Q |
144 |
ctgaaaacaatttatgatcatgttataaattgtttcca |
181 |
Q |
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| T |
32859970 |
ctgaaaacaatttatgaacatgttataaattgtttcca |
32859933 |
T |
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