View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_low_16 (Length: 299)
Name: NF3931_low_16
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 3632581 - 3632871
Alignment:
| Q |
1 |
ctggaagtgatagttcatctctcagtgttgctccatctcctggaaatgtaagttttattttctttcaactatcggattaaaatattgatattaaataaaa |
100 |
Q |
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| T |
3632581 |
ctggaagtgatagttcatctctcagtgttgctccatctcctggaaatgtaagttttattttctttcaactatcggattaaaatattgatattaaataaaa |
3632680 |
T |
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| Q |
101 |
tcatttttcaatcacataaaaaagttcaagtgcaaccttgtaatgtcaatgtatgaaccagttataagattcactaaataatatcactggaaggttttga |
200 |
Q |
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| T |
3632681 |
tcatttttcaatcacataaaaaagttcaagtgcaaccttgtaatgtcaatgtatgaaccagttataagattcactaaataatatcactggaaggttttga |
3632780 |
T |
|
| Q |
201 |
atttatctttaataattggttaacacaatttatctactgcagccnnnnnnnccttttcgaatatgtttatcttcccatagtattatctacc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
3632781 |
atttatctttaataattggttaacacaatttatctactgcagcctttttttccttttcgaatatgtttatcttcccatagtattatttacc |
3632871 |
T |
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