View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_low_2 (Length: 558)
Name: NF3931_low_2
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 27845224 - 27845465
Alignment:
| Q |
17 |
aaatagggaggttaaatgcttatgagagctatatagctagggtagggaataagttagtacctgttatatttgtacataagtctaccaagagggacaaaag |
116 |
Q |
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| T |
27845224 |
aaatagggaggttaaatgcttatgagagctatatagctagggtcgggaataagttagtacctgttatatttgtacatatgtctaccaagagggacaaaag |
27845323 |
T |
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| Q |
117 |
agacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttg-nnnnnnnnggaatcaagggatatagctttattttaacc |
215 |
Q |
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| T |
27845324 |
agacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgtttttttttggaatcaagggatatagctttattttaacc |
27845423 |
T |
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| Q |
216 |
tttgttaactagccatttgcaaatacttactttgactgtaatt |
258 |
Q |
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| T |
27845424 |
tttgttaactagccatttgcaaatacttac-ttgactgtaatt |
27845465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 273 - 421
Target Start/End: Original strand, 27845558 - 27845721
Alignment:
| Q |
273 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagaaccatcctaacaacatttttat--------------- |
357 |
Q |
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| T |
27845558 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagatccatcctaacaacatttttattacaaacgacggata |
27845657 |
T |
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| Q |
358 |
-tagatcagacttaaaacatatcaattttgaaattgaccttatgctaacaacattttcattacac |
421 |
Q |
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| T |
27845658 |
atagatcagactt-aaacatatatattttgaaattgaccttatgctaacaacattttcattacac |
27845721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 27845706 - 27845786
Alignment:
| Q |
435 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
515 |
Q |
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| T |
27845706 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
27845786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 20140192 - 20140343
Alignment:
| Q |
110 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnngg---aatcaagggatatagcttt |
206 |
Q |
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| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
20140291 |
T |
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| Q |
207 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
258 |
Q |
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| T |
20140292 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
20140343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 22192677 - 22192526
Alignment:
| Q |
110 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnngg---aatcaagggatatagcttt |
206 |
Q |
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| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
22192578 |
T |
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| Q |
207 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
258 |
Q |
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| T |
22192577 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
22192526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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