View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_low_20 (Length: 255)
Name: NF3931_low_20
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3045923 - 3046161
Alignment:
| Q |
1 |
atcgatttattaattgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgtttacttattttaggt |
100 |
Q |
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| T |
3045923 |
atcgatttattaattgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgtttacttattttaggt |
3046022 |
T |
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| Q |
101 |
caagtaatcgtgtaatggttaaaaattcatattttaagttggggtgtgcacgatttgaaccctaactcttgtatatatttaacttcttaattagtgcttt |
200 |
Q |
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| T |
3046023 |
caagtaattgtgtaatggttagaaattcatattttaaggtggggtgtgcacgattcgaaccctaactcttgtatatatttaacttcttaaccagtgcctt |
3046122 |
T |
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| Q |
201 |
agatgcacttattagttaactctattatgtaatgttcat |
239 |
Q |
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| T |
3046123 |
aaatgcatttattagctaactctattatgtaatgttcat |
3046161 |
T |
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