View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3931_low_21 (Length: 254)

Name: NF3931_low_21
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3931_low_21
NF3931_low_21
[»] chr6 (15 HSPs)
chr6 (1-240)||(23391167-23391406)
chr6 (1-163)||(23586931-23587093)
chr6 (1-163)||(23583048-23583209)
chr6 (1-166)||(23289772-23289937)
chr6 (4-164)||(23283461-23283621)
chr6 (5-157)||(23506629-23506781)
chr6 (1-164)||(23257788-23257951)
chr6 (5-163)||(23633965-23634123)
chr6 (7-164)||(23251812-23251969)
chr6 (5-166)||(23593994-23594155)
chr6 (23-141)||(23506807-23506925)
chr6 (4-65)||(23266442-23266503)
chr6 (179-240)||(23582941-23583002)
chr6 (179-240)||(23586824-23586885)
chr6 (1-65)||(23247499-23247563)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23391406 - 23391167
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23391406 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 23391307  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacggctatttccacctctgccacggaggagcagagtag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  23391306 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacggctatttccacctctgctacggcggaacagagtag 23391207  T
Q  201 gacttttatggaagaggaagaagagggggtgatgaacatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23391206 gacttttatggaagaggaagaagagggggtgatgaacatg 23391167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23587093 - 23586931
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||| || ||||| ||||| |||||||||||||    
T  23587093 gcaatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcggctccccaaacctgcaactactcaagcaaaggatatacaaaagg 23586994  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgaca 163  Q
    | ||| || ||||||| ||||||||||||||||||||||||| | | |||||| ||| |||||    
T  23586993 ctgctacagaggccgccgaggctttcagaccagacaagactttattgactaatcacaatgaca 23586931  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23583209 - 23583048
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| | |||||| || ||||||||||| |||||||||||||    
T  23583209 gcaatggcattgaggg-ccgctacgcctgtctcaactttgcagactcagcatggcggctccccaaacctgcaactactcaggcaaaggatatacaaaagg 23583111  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgaca 163  Q
    | |||||| |||||||  |||||||||||||||||||||||| | | |||||| ||| |||||    
T  23583110 ctgctgcagaggccgccaaggctttcagaccagacaagactttattgactaatcacaatgaca 23583048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 23289937 - 23289772
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  ||| ||||| |||||| || || | |||||||| || |||| ||    
T  23289937 gcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctgcctccgctgaagcaaaagacattcaaaggg 23289838  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacgg 166  Q
    | |||| | | ||||||||||||||||||||||||||||||| ||| |||| || |||||||||||    
T  23289837 cagctggagaagccgctgaggctttcagaccagacaagactttaatgactactggcattgacacgg 23289772  T

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Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 23283621 - 23283461
Alignment:
Q  4 atggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcgg 103  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| | |||| |||| ||||| |||||| || || | |||||||| || |||| ||| |    
T  23283621 atggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcag 23283522  T
Q  104 ctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 164  Q
    ||||| | ||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  23283521 ctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacac 23283461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 23506781 - 23506629
Alignment:
Q  5 tggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggc 104  Q
    ||||||| || || ||| ||||||||||||||||||||||||| || | |||||| ||||| |||||||| |   || ||| |||||||||||| |||||    
T  23506781 tggcattaagaggtcgcaacgcctgtctcaactttgcagactcggcctcgcggcttcctattcctgccactaaagagacaagagatatacaaaacgcggc 23506682  T
Q  105 tgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgaca 157  Q
    |||| | ||  ||||||||||||||||||||||||||| ||  ||||||||||    
T  23506681 tgcagaagctactgaggctttcagaccagacaagactttaacgactaatgaca 23506629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23257951 - 23257788
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||| || ||||| || || ||  |   |  ||||||||| |||||||    
T  23257951 gcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaagg 23257852  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 164  Q
    |||||||  | || || || ||||| |||||||||||||||| ||| | |||||| ||||||||    
T  23257851 cggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacac 23257788  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 23634123 - 23633965
Alignment:
Q  5 tggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggc 104  Q
    ||||||| || || ||| |||||||||| || ||||| ||||| || | |||||| ||||| |||||||| ||  || ||| ||||||||||||| ||||    
T  23634123 tggcattaagaggtcgcaacgcctgtcttaattttgctgactctgcctcgcggcttcctattcctgccactacagagacaagagatatacaaaagacggc 23634024  T
Q  105 tgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgaca 163  Q
    |||| | || || ||||||||||||||||||||||||| ||  ||| |||||| |||||    
T  23634023 tgcagaagctgccgaggctttcagaccagacaagactttaacgactgatgacaatgaca 23633965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 23251969 - 23251812
Alignment:
Q  7 gcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggctg 106  Q
    ||||||||||||||||| ||||||||||| ||||||||||| | |||||| || ||||| || || ||  |   |  ||||||||| |||||||| |||     
T  23251969 gcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcagcta 23251870  T
Q  107 cacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 164  Q
    || | ||||| || ||||| ||||||||||| |||| ||| || | ||||||||||||    
T  23251869 caaaagccgccgaagcttttagaccagacaatactttaatgaccagtgacattgacac 23251812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 23594155 - 23593994
Alignment:
Q  5 tggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggc 104  Q
    |||||||||| ||  | ||||| |||||||||||||||||||| || |||||||||| ||| |||||||| |   || |||   ||||| ||||||||||    
T  23594155 tggcattgagaggttgttacgcttgtctcaactttgcagactctgcatggcggctccttattcctgccactataaagacaaggtatatataaaaggcggc 23594056  T
Q  105 tgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacgg 166  Q
     ||| | ||||| |||||||||| |||| | |||| |||||| |||  ||| ||||||||||    
T  23594055 agcagaagccgcagaggctttcaaaccaaataagagttcaatgactggtgatattgacacgg 23593994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 23506925 - 23506807
Alignment:
Q  23 acgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggctgcacaggccgctgaggc 122  Q
    ||||||||||||||||||||||||| || | |  ||||||||| ||||| ||     || ||||||||||||||||| |||||||  | || ||||||||    
T  23506925 acgcctgtctcaactttgcagactcggccttgacgctccctattcctgctacttgcgagacaaaagatatacaaaagacggctgctgaagctgctgaggc 23506826  T
Q  123 tttcagaccagacaagact 141  Q
     |||||||||| |||||||    
T  23506825 attcagaccaggcaagact 23506807  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 23266503 - 23266442
Alignment:
Q  4 atggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctat 65  Q
    |||||||||||||| ||||||||||||||||| |||||||| || | ||||||||| |||||    
T  23266503 atggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctat 23266442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 23583002 - 23582941
Alignment:
Q  179 ctgccacggaggagcagagtaggacttttatggaagaggaagaagagggggtgatgaacatg 240  Q
    ||||||| ||||||||||||| || || |||||||||| ||||||| || ||||||||||||    
T  23583002 ctgccactgaggagcagagtatgatttgtatggaagagaaagaagaaggagtgatgaacatg 23582941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 23586885 - 23586824
Alignment:
Q  179 ctgccacggaggagcagagtaggacttttatggaagaggaagaagagggggtgatgaacatg 240  Q
    ||||||| ||||||||||||| || || |||||||||| ||||||| || ||||||||||||    
T  23586885 ctgccactgaggagcagagtatgatttgtatggaagagaaagaagaaggagtgatgaacatg 23586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23247563 - 23247499
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctat 65  Q
    ||||||||||||||||||||||| ||||||||||| ||  ||||||| | |||||| || |||||    
T  23247563 gcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctat 23247499  T

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