View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3931_low_23 (Length: 240)
Name: NF3931_low_23
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_23 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 3045705 - 3045939
Alignment:
| Q |
18 |
gggataccatgtagtagaaggggtagacagaaaagtataaaagaagaaacctgagaatatatttttgaaggtttaattccccaaacatgactattttata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045705 |
gggataccatgtagtagaaggggtagacagaaaagtataaaagaagaaacctgagaatatatttttgaaggtttaattccccaaacatgactattttata |
3045804 |
T |
|
| Q |
118 |
gttgtaatgtt-----------tatatta-gtaagaaatacaattaattaagaagatccgtatccacttacactcattgagatattatttcatgtgggag |
205 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045805 |
gttgtaatgttcagttaagggatatgttatataagaaatacaattaattaagaagatccgtatccacttacactcattgagatattatttcatgtgggag |
3045904 |
T |
|
| Q |
206 |
tattgaaattcgtattcgatcgatttattaattgt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045905 |
tattgaaattcgtattcgatcgatttattaattgt |
3045939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University