View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_low_24 (Length: 235)
Name: NF3931_low_24
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 16000183 - 16000401
Alignment:
| Q |
1 |
ttagtttctttgtatcccttggtttaatttttagtgtgaaaattgggaaataaagcataataattgatagaatctaagttcttagcatgtggatgttgaa |
100 |
Q |
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| T |
16000183 |
ttagtttctttgtatcccttggtttaatttttagtgtgaaaattgggaaataaagcataataattgatagaatctaagttcttagcatgtggatgttgaa |
16000282 |
T |
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| Q |
101 |
gagtcaaaagatttatgtgcttctgagtttgtttttccttgtacaggattattatagtgcataaaatggaaaccattgtccttgattctcaaatcattgg |
200 |
Q |
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| T |
16000283 |
gagtcaaaagatttatgtgcttctgagtttgtttttccttgtacaggattattatagtgcataaaatggaaaccattgtccttgattctcaaatcattgg |
16000382 |
T |
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| Q |
201 |
gaatccaaagtcatttgtg |
219 |
Q |
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| T |
16000383 |
gaatccaaagtcatttgtg |
16000401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 18102737 - 18102628
Alignment:
| Q |
110 |
gatttatgtgcttctgagtttgtttttccttgtacaggattattatagtgcataaaatggaaaccattgtccttgattctcaaatcattgggaatccaaa |
209 |
Q |
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| T |
18102737 |
gattcatgtgcttctgtgtttgtttttccttgtgcaggattattatggtgcttaacatggaaaccataatacctgattgtgaaatcattgggaatccaaa |
18102638 |
T |
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| Q |
210 |
gtcatttgtg |
219 |
Q |
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| T |
18102637 |
gtcatttgtg |
18102628 |
T |
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