View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3931_low_4 (Length: 469)

Name: NF3931_low_4
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3931_low_4
NF3931_low_4
[»] scaffold0368 (2 HSPs)
scaffold0368 (78-321)||(12858-13101)
scaffold0368 (378-434)||(13155-13211)
[»] chr1 (5 HSPs)
chr1 (78-321)||(42837706-42837949)
chr1 (191-309)||(25281049-25281163)
chr1 (378-434)||(42837596-42837652)
chr1 (78-170)||(25280964-25281058)
chr1 (1-29)||(18033801-18033829)
[»] chr8 (2 HSPs)
chr8 (191-309)||(12346777-12346892)
chr8 (89-170)||(12346703-12346786)
[»] chr4 (1 HSPs)
chr4 (23-79)||(54419027-54419083)
[»] chr6 (2 HSPs)
chr6 (23-79)||(6254465-6254521)
chr6 (1-31)||(27605409-27605439)
[»] chr5 (1 HSPs)
chr5 (1-29)||(9127326-9127354)


Alignment Details
Target: scaffold0368 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 78 - 321
Target Start/End: Original strand, 12858 - 13101
Alignment:
Q  78 atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta 177  Q
    |||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  12858 atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta 12956  T
Q  178 nnnnnnnnngataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac 276  Q
             || ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||     
T  12957 tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat 13056  T
Q  277 tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt 321  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  13057 tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt 13101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 13155 - 13211
Alignment:
Q  378 actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaa 434  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  13155 actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa 13211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 78 - 321
Target Start/End: Complemental strand, 42837949 - 42837706
Alignment:
Q  78 atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta 177  Q
    |||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  42837949 atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta 42837851  T
Q  178 nnnnnnnnngataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac 276  Q
             || ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||     
T  42837850 tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat 42837751  T
Q  277 tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt 321  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  42837750 tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt 42837706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 25281049 - 25281163
Alignment:
Q  191 aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca 289  Q
    |||||||||| |||||||| ||||||||| |||| || ||||||||||||||||||||  || |||||||||||||| |||||||||||    |||||||    
T  25281049 aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccacgttactt----ttcttca 25281143  T
Q  290 ttttccaacaaagcaaaatt 309  Q
    |||| |||||||||| ||||    
T  25281144 tttttcaacaaagcagaatt 25281163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 42837652 - 42837596
Alignment:
Q  378 actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaa 434  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  42837652 actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa 42837596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 25280964 - 25281058
Alignment:
Q  78 atctttatacataatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgac-gcctacctctttcaaatttgaatttcaaattccctt 170  Q
    |||||||||  |||||||||||||||||||||||| || |||||||||||||| || |  ||| |||||| ||||||||||||||||||||||||    
T  25280964 atctttatatctaatccaaaggtacataatgcataccctctaaccctaaaaatatggcaccctccctcttccaaatttgaatttcaaattccctt 25281058  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18033829 - 18033801
Alignment:
Q  1 aattaaaaaggaacggaggtagtatatat 29  Q
    |||||||||||||||||||||||||||||    
T  18033829 aattaaaaaggaacggaggtagtatatat 18033801  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 12346777 - 12346892
Alignment:
Q  191 aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca 289  Q
    |||||||||| |||||||| ||||||||| |||| || ||||||||||||||||||||  || |||||||||||||| ||| ||||||||   |||||||    
T  12346777 aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccatgttacttt---ttcttca 12346872  T
Q  290 ttttccaacaaagcaaaatt 309  Q
    |||| |||||||||| ||||    
T  12346873 tttttcaacaaagcagaatt 12346892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 12346703 - 12346786
Alignment:
Q  89 taatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgacgcc-tacctctttcaaatttgaatttcaaattccctt 170  Q
    |||||||||||||||||||||||| || |||||||||||||| || | || | |||||| ||||||||||||||||||||||||    
T  12346703 taatccaaaggtacataatgcataccctctaaccctaaaaatctggcaccctccctcttccaaatttgaatttcaaattccctt 12346786  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 54419027 - 54419083
Alignment:
Q  23 tatatatatacaagtgaaccaaaacgcatatatgatagacaatgtttcatcaaatat 79  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  54419027 tatatatatacaagtgaaccaaaacgcatagatgatagacagtgtttcatcaaatat 54419083  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 6254521 - 6254465
Alignment:
Q  23 tatatatatacaagtgaaccaaaacgcatatatgatagacaatgtttcatcaaatat 79  Q
    |||||||||||||||||||||||||||||| ||||||| || | |||||||||||||    
T  6254521 tatatatatacaagtgaaccaaaacgcatagatgatagtcagtatttcatcaaatat 6254465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 27605439 - 27605409
Alignment:
Q  1 aattaaaaaggaacggaggtagtatatatat 31  Q
    |||||||||||||||||||||||||||||||    
T  27605439 aattaaaaaggaacggaggtagtatatatat 27605409  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9127354 - 9127326
Alignment:
Q  1 aattaaaaaggaacggaggtagtatatat 29  Q
    |||||||||||||||||||||||||||||    
T  9127354 aattaaaaaggaacggaggtagtatatat 9127326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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