View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_low_5 (Length: 452)
Name: NF3931_low_5
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Original strand, 48599584 - 48600026
Alignment:
| Q |
11 |
atcatcatccacattaatggcctaatattaacagccatgtaacattttaatatacaaacattcttttctatagtattatgattaatagccgatatttggt |
110 |
Q |
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| T |
48599584 |
atcatcatccacattaatggcctaatattaacagccatgtaacattttaatatacaaacattcttttctatagtattatgattaatagccaatatttggt |
48599683 |
T |
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| Q |
111 |
attatggtgggtatgccaaaatcacaatgacccgccatg-taccaaacatacactaaaactgactagaaatggaagcacatggacacgaacaaaaaacaa |
209 |
Q |
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| T |
48599684 |
attatggtgggtatgccaaaatcacaatgactcgccatgataccaaacatacactacaactaactagaaatggaagcacatggacacgaacaaaaaacaa |
48599783 |
T |
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| Q |
210 |
gtatcagggctatgagattggtgaaaagacaacatgagatagttaacatgtgaaaaacttagtagtcaaaagttaatattgacttacagagcgagcggac |
309 |
Q |
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| T |
48599784 |
gtatcagggctatgagattggtgaaaagacaacatgagatagttaacatgtgaaaaacttagtagtcaaaagtaaatattgacttacagagcgagcggac |
48599883 |
T |
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| Q |
310 |
cccacggcccaaggtcttgatcaacccatatcaagaaatccttcagaatctgcatggcgaaaatgtaaggggtaaccaannnnnnnncatgaattaaaat |
409 |
Q |
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| T |
48599884 |
cccacggcccaaggtcttgatcaacccatatcaagaaatccttcagaatctgcatggcgaaaatgtaaggggtaaccaattttttttcatgaattaaaat |
48599983 |
T |
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| Q |
410 |
acaaatgtggtgcatgtaacgaaaaatattataaaaatggcat |
452 |
Q |
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| T |
48599984 |
acaaatgtggtgcatgtaacgaaaaatattacaaaaatggcat |
48600026 |
T |
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