View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3932_low_2 (Length: 251)
Name: NF3932_low_2
Description: NF3932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3932_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 89 - 251
Target Start/End: Complemental strand, 4134035 - 4133873
Alignment:
| Q |
89 |
gatcctatctcatatttgacggtttttctattatgcaattttagaggtcacaatatagaaaaactctttcttcctttttggtactaatataggactactg |
188 |
Q |
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| T |
4134035 |
gatcctatctcatatttgacagtttttctattatgcaattttagaggtcacaatatagaaaaactctttcttcctttttggtactaatatagtactactg |
4133936 |
T |
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| Q |
189 |
ctgcgagtgcaatatatttgagcatcattcctttttatggcaaaaactctttctcttcaaacc |
251 |
Q |
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| T |
4133935 |
ctgcgagtgcaatatatttgagcatcattcctttttatggcaaaaactctttctcttcaaacc |
4133873 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 4134129 - 4134056
Alignment:
| Q |
20 |
taggtttttagtgagtaataataagtcattgattaaaatgaaatgaaaggttaaaatttggtctcaacggatcc |
93 |
Q |
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| T |
4134129 |
taggtttttagtgagtaattataagtcattgattaaaatgaaatgaaaggttaagatttggtgtcaacgaatcc |
4134056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 14826142 - 14826220
Alignment:
| Q |
25 |
ttttagtgagtaataataagtcattgattaaaatgaaatgaaaggttaaaatttggtctcaacggatcctatctcatat |
103 |
Q |
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| T |
14826142 |
ttttagtgagtaattataaaccattgattaaaatgaaatgaaaggttaagatttggtgtcaacggatcctatctcatat |
14826220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 3654075 - 3654027
Alignment:
| Q |
55 |
aaatgaaatgaaaggttaaaatttggtctcaacggatcctatctcatat |
103 |
Q |
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| T |
3654075 |
aaatcaaatcaaaggatataatttggtgtcaacggatcctatctcatat |
3654027 |
T |
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