View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3932_low_3 (Length: 226)
Name: NF3932_low_3
Description: NF3932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3932_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 6073756 - 6073572
Alignment:
| Q |
19 |
cacaagggccatttaaagatacataaaatgaatacctaagtagaggatgagcattgaaaattataaagttataaaaccaactgttacatagagttggaga |
118 |
Q |
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| T |
6073756 |
cacaagggccatttaaagatacataaaatgaatacctaagtagaggatgagcattgaaaattataaagtgataaaaccaactgttacatagagttggaga |
6073657 |
T |
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| Q |
119 |
atatggctgaaagtctcaagtttatatgtgttataattatatttctttcctcatttattgctgcaaaaaatattgacggtaatcc |
203 |
Q |
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| T |
6073656 |
atatggctgaaagtttcaagtttatatgtgttataattatatttctttgctcatttattgctgcaaaaaatattgacggtaatcc |
6073572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 6080716 - 6080640
Alignment:
| Q |
118 |
aatatggctgaaagtctcaagtttatatgtgttataattatatttctttcctcatttattgctgcaaaaaatattga |
194 |
Q |
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| T |
6080716 |
aatatgactgaaattctcaagtttgtttgtgttatgattatatttctctcctcatttattgtttcacaaaatattga |
6080640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 6091841 - 6091719
Alignment:
| Q |
67 |
gagcattgaaaattataaagttataaaaccaactgttacataga--gttggagaatatggctgaaagtctcaagtttatatgtgttataattatatttct |
164 |
Q |
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| T |
6091841 |
gagctttgaaaatcataaagtgattaaaccatttgttacatataaagtgggaaaatatgactgaaattctcaagtttgtttgtgttatgattatatttat |
6091742 |
T |
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| Q |
165 |
ttcctcatttattgctgcaaaaa |
187 |
Q |
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| T |
6091741 |
ctcctcatttattgtttcaaaaa |
6091719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 6068610 - 6068692
Alignment:
| Q |
118 |
aatatggctgaaagtctcaagtttatatgtgttataattatatttctttcctcatttattgctgcaaaaaatattgacggtaa |
200 |
Q |
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| T |
6068610 |
aatatgactgaaattctcaagtttgtttgtattatgattatattcctctcctcatttattgtttcacaaaatattgacggtaa |
6068692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 6112934 - 6113039
Alignment:
| Q |
75 |
aaaattataaagttataaaaccaactgttacataga--gttggagaatatggctgaaagtctcaagtttatatgtgttataattatatttctttcctcat |
172 |
Q |
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| T |
6112934 |
aaaatcataaagtgattaaaccatttgttacatataaagtgggaaaatatggctgaaattctaaagtttatttgttttatgattatatttctctcctcat |
6113033 |
T |
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| Q |
173 |
ttattg |
178 |
Q |
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|||||| |
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| T |
6113034 |
ttattg |
6113039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 6119806 - 6119919
Alignment:
| Q |
67 |
gagcattgaaaattataaagttataaaaccaactgttacataga--gttggagaatatggctgaaagtctcaagtttatatgtgttataattatatttct |
164 |
Q |
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|||| |||||||| ||||||| || ||||| ||||||||| | || ||| ||||||||||||| |||||||||| | ||| |||| ||||||||||| |
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| T |
6119806 |
gagctttgaaaatgataaagtgattaaaccgtttgttacatataaagtgggaaaatatggctgaaattctcaagtttgtttgttttatgattatatttct |
6119905 |
T |
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| Q |
165 |
ttcctcatttattg |
178 |
Q |
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| T |
6119906 |
ctcctcatttattg |
6119919 |
T |
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