View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3933_high_10 (Length: 304)
Name: NF3933_high_10
Description: NF3933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3933_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 21111375 - 21111664
Alignment:
| Q |
1 |
gaagcaaaattgtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtgatcattgact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21111375 |
gaagcaaaattgtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtggtcattgact |
21111474 |
T |
|
| Q |
101 |
gcaccacaatcagcttcaagtttttctgaaaaagttggaaaagctcaaaccacactatctccagtatctagctgagggacatcctcaatgtctaaggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
21111475 |
gcaccacaatcagcttcaagtttttctgaaaaagttggaaaaactcaaaccacactatctccagtatctagctaagggacatcctcaatgtctaaggctt |
21111574 |
T |
|
| Q |
201 |
tcttattgccaaatgctataagtggtcccacccaagtgaaagggagaagacctaaccatcagtagtaaagggttaacagtgtcactccct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21111575 |
tcttattgccaaatgctataagtggtcccacccaagtgaaagtgagaagacctaaccatcagtagtaaagggttaacagtgtcagtccct |
21111664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 41452958 - 41453213
Alignment:
| Q |
1 |
gaagcaaaattgtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtgatca-----t |
95 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||| | | | |
|
|
| T |
41452958 |
gaagcaaaagtgtttaataatgcaagaaaagcagtaaaaagaatctctttccaccctgagattatcaatgacttaactaacttaagtgtggttactctat |
41453057 |
T |
|
| Q |
96 |
tgactgcaccacaatcagcttcaagtttttctgaaaaagttggaaaagctcaaaccacactatctccagtatctagctgagggacatcctcaatgtctaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
41453058 |
tgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaagctcctaccacactatctccactatctagctgaggaacatcctcaaggtctaa |
41453157 |
T |
|
| Q |
196 |
ggttttcttattgccaaatgctataagtggtcccacccaagtgaaagggagaagac |
251 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41453158 |
gtttttcttataaccaaatgctataagtggtcccacccaagtgaaagtgagaagac |
41453213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 41439789 - 41440044
Alignment:
| Q |
1 |
gaagcaaaattgtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtgatca-----t |
95 |
Q |
| |
|
||||||||| | || ||||||| ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||| | | | |
|
|
| T |
41439789 |
gaagcaaaagttttcaacaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctat |
41439888 |
T |
|
| Q |
96 |
tgactgcaccacaatcagcttcaagtttttctgaaaaagttggaaaagctcaaaccacactatctccagtatctagctgagggacatcctcaatgtctaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| ||| || |||||||||||| ||||||||||||| | |||||||| |||||| |
|
|
| T |
41439889 |
tgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaaactccaatgacactatctccactatctagctgaggaatatcctcaaggtctaa |
41439988 |
T |
|
| Q |
196 |
ggttttcttattgccaaatgctataagtggtcccacccaagtgaaagggagaagac |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
41439989 |
ggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagac |
41440044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 14241948 - 14242198
Alignment:
| Q |
6 |
aaaattgtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtgatca-----ttgact |
100 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| | | |||| | |
|
|
| T |
14241948 |
aaaagtgtttaccaatgcaagaaaagcagtgataagaatttctttccaccctgagattatcaatgacttaaccaacttaagtgtggttactctattgatt |
14242047 |
T |
|
| Q |
101 |
gcaccacaatcagcttcaagtttttctgaaaaagttggaaaagctcaaaccacactatctccagtatctagctgagggacatcctcaatgtctaaggttt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| | |||||||||| |||||||||||||| | ||||||||||||| |||||||||| |||||| || | |
|
|
| T |
14242048 |
gcaccacaatcagcttcaagtttgtctctgaaaataggaaaagctccaaccacactatctctactatctagctgaggaacatcctcaaggtctaacgtct |
14242147 |
T |
|
| Q |
201 |
tcttattgccaaatgctataagtggtcccacccaagtgaaagggagaagac |
251 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| | |||||||| |
|
|
| T |
14242148 |
tcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagac |
14242198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 14371373 - 14371123
Alignment:
| Q |
6 |
aaaattgtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtgatca-----ttgact |
100 |
Q |
| |
|
|||| |||||| |||||||||| || |||||| || ||| ||||| | |||||||||||||| ||||||||||| ||||||||| | | |||| | |
|
|
| T |
14371373 |
aaaagtgtttaccaatgcaagagaagcagtgataaaaatctcttttttccctgagattatcaaagacttaaccaatttaagtgtggttactctattgatt |
14371274 |
T |
|
| Q |
101 |
gcaccacaatcagcttcaagtttttctgaaaaagttggaaaagctcaaaccacactatctccagtatctagctgagggacatcctcaatgtctaaggttt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| | |||||||||| |||||||||||||| | ||||||||||||| |||||||||| |||||| || | |
|
|
| T |
14371273 |
gcaccacaatcagcttcaagtttgtctctgaaaataggaaaagctccaaccacactatctctactatctagctgaggaacatcctcaaggtctaacgtct |
14371174 |
T |
|
| Q |
201 |
tcttattgccaaatgctataagtggtcccacccaagtgaaagggagaagac |
251 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| | |||||||| |
|
|
| T |
14371173 |
tcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagac |
14371123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University