View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3933_high_9 (Length: 306)
Name: NF3933_high_9
Description: NF3933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3933_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 7790995 - 7791278
Alignment:
| Q |
1 |
attgatttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaattttttgttctctaatttcaacttttgcccttgccatttctgtt |
100 |
Q |
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| T |
7790995 |
attgatttatatggtaagttaatccgataagtttaggcaagttgaaggaaaaacaattttttgttctctaatttcaacttttgcccttgccatttctgtt |
7791094 |
T |
|
| Q |
101 |
taacacccggaaagaaagctaatttcaaattacttagctacacctgaatttatatgaatcatttgttgtatgcctaattttatttcttctgttgatatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7791095 |
taacacccggaaagaaagctaatttcaaattacttagctacacctgaatttatatgaatcatttgttgtatgcctaattttatttcttctgttgatatta |
7791194 |
T |
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| Q |
201 |
tcttttggatgataaattattcgtccattgtttgtaaatggtgaaatggaatagacacatataaggataacttacaattttagc |
284 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
7791195 |
tcttttggatgataaattattcatccattgtttgtaaatggtgaaatggaatagacacagataaggataacttccaattttagc |
7791278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 284
Target Start/End: Complemental strand, 7236967 - 7236761
Alignment:
| Q |
79 |
ttttgcccttgccatttctgtttaacacccggaaagaaagctaatttcaaattacttagctac-acctgaatttatatgaatcatttgttgtatgcctaa |
177 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||| |||||| |
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| T |
7236967 |
ttttgcccttgccatttctgtttcacacccggaaagaaagctaatttcaaattaacgagcttgtaactgaatttatatgaatcattttttgtaggcctaa |
7236868 |
T |
|
| Q |
178 |
ttttatttcttctgttgatattatcttttggatgataaattattcgtccattgtttgtaaatggtgaaatggaatagacacatataaggataacttacaa |
277 |
Q |
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| T |
7236867 |
ttttatttcttctgttcatattatccttccgatgataaattattcatccattgtttgtaaatagtgaaatggaatagacacagataaggataacttacaa |
7236768 |
T |
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| Q |
278 |
ttttagc |
284 |
Q |
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||||||| |
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| T |
7236767 |
ttttagc |
7236761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7237025 - 7236970
Alignment:
| Q |
1 |
attgatttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaa |
56 |
Q |
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| T |
7237025 |
attgatttatatggttagttaatcctataagtttatgcaagttgaaggaaaaacaa |
7236970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 7802054 - 7802108
Alignment:
| Q |
195 |
atattatcttttggatgataaattattcgtccattgtttgtaaatggtgaaatgg |
249 |
Q |
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| T |
7802054 |
atattatcttttgtatgataaattatttatccgttgtttgtaaatggtgaaatgg |
7802108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 7766938 - 7767006
Alignment:
| Q |
214 |
aaattattcgtccattgtttgtaaatggtgaaatggaatagacacatataaggataacttacaattttag |
283 |
Q |
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||||||||| | ||||| ||||||||||||||||||||||||||| || | |||||||| ||||||||| |
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| T |
7766938 |
aaattattcattcattgcttgtaaatggtgaaatggaatagacacgcatta-gataacttccaattttag |
7767006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7772932 - 7772859
Alignment:
| Q |
1 |
attgatttatatggtaagttaatccgataagtttatgcaagttgaagga--aaaacaattttttgttctctaat |
72 |
Q |
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|||| |||||||||||| |||||| ||| ||||||| || ||||||||| |||| || ||||||||||||||| |
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| T |
7772932 |
attgttttatatggtaaattaatctgatgagtttatacatgttgaaggaaaaaaataaatttttgttctctaat |
7772859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 37826101 - 37826031
Alignment:
| Q |
6 |
tttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaattttttgttctctaatttca |
76 |
Q |
| |
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|||||||||||| ||||| ||| || ||||||| |||||||||||| || |||||||||||||||||| |
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| T |
37826101 |
tttatatggtaaattaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatttca |
37826031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 50669929 - 50670002
Alignment:
| Q |
1 |
attgatttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaattttttgttctctaattt |
74 |
Q |
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|||| |||||||||||| ||||| | | | |||||||| ||||||||||||| || |||||||||||||||| |
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| T |
50669929 |
attgttttatatggtaaactaatctggttaatttatgcatgttgaaggaaaaagaaggttttgttctctaattt |
50670002 |
T |
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