View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3934_high_13 (Length: 367)

Name: NF3934_high_13
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3934_high_13
NF3934_high_13
[»] chr1 (3 HSPs)
chr1 (1-167)||(42169655-42169821)
chr1 (165-344)||(42169384-42169572)
chr1 (85-142)||(48064182-48064241)
[»] chr7 (2 HSPs)
chr7 (281-330)||(7725551-7725600)
chr7 (85-114)||(5620261-5620290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (295-344)||(333898-333947)
[»] chr4 (2 HSPs)
chr4 (85-139)||(17823012-17823068)
chr4 (86-114)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (85-113)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (86-114)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 42169821 - 42169655
Alignment:
Q  1 aagattttgaaatttgtgccatattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggccctgtttggat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169821 aagattttgaaatttgtgccatattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggccctgtttggat 42169722  T
Q  101 aaacaacttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct 167  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42169721 aaacaacttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct 42169655  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 165 - 344
Target Start/End: Complemental strand, 42169572 - 42169384
Alignment:
Q  165 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtagtattaattaccaacaaataa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42169572 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtaatattaattaccaacaaataa 42169473  T
Q  265 t--------gtgtagccatggatta-ttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc 344  Q
    |        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169472 tcagagttagtgtagccatggattatttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc 42169384  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 48064182 - 48064241
Alignment:
Q  85 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcatgat 142  Q
    |||||| |||||||||||||||||||||| ||  || ||||||||||  |||||||||||    
T  48064182 taggccatgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 7725551 - 7725600
Alignment:
Q  281 attattacctatggtgagtttcagctatacccatcatagtaagataatgg 330  Q
    ||||||||||||||||||||||||||||| |  ||| |||||||||||||    
T  7725551 attattacctatggtgagtttcagctatatcagtcacagtaagataatgg 7725600  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
Q  85 taggccctgtttggataaacaacttaatta 114  Q
    ||||||||||||||||||||||||||||||    
T  5620290 taggccctgtttggataaacaacttaatta 5620261  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 333947 - 333898
Alignment:
Q  295 tgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc 344  Q
    |||||||||||||| | ||||||||||||||| || ||||| ||||||||    
T  333947 tgagtttcagctatgctcatcatagtaagatagtgactgaatgcacgagc 333898  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 17823012 - 17823068
Alignment:
Q  85 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcat 139  Q
    |||||| |||||||||||||| ||||||| ||  |||||||||||||| ||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataagggcttatcat 17823068  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 30090132 - 30090160
Alignment:
Q  86 aggccctgtttggataaacaacttaatta 114  Q
    |||||||||||||||||||||||||||||    
T  30090132 aggccctgtttggataaacaacttaatta 30090160  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 14955597 - 14955625
Alignment:
Q  85 taggccctgtttggataaacaacttaatt 113  Q
    |||||||||||||||||||||||||||||    
T  14955597 taggccctgtttggataaacaacttaatt 14955625  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 37308260 - 37308232
Alignment:
Q  86 aggccctgtttggataaacaacttaatta 114  Q
    |||||||||||||||||||||||||||||    
T  37308260 aggccctgtttggataaacaacttaatta 37308232  T

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