View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_high_21 (Length: 283)
Name: NF3934_high_21
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 5980762 - 5980509
Alignment:
| Q |
14 |
ttcttcctttgaaaacttttcttgatgagataaatcttctaagaaaatatttcttatttagattcagataaatgtttgccatataaaaa-ccgatttttt |
112 |
Q |
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| T |
5980762 |
ttcttcctttgaaaacttttcttgatgagataaatcttctaagaaaatatttcttatttagattcagataaatttttgccatataaaaaaccgatttttt |
5980663 |
T |
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| Q |
113 |
aatatattttgnnnnnnntagtgacgatttcccatatacatctctgtatctgaattttccatatatattattacctttaatgttttgagaattgatatca |
212 |
Q |
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| T |
5980662 |
aatatattttgaaaaaaatagtgacgatttcccatatacatctctgtatctgaattttccatatatattattacctttaatgttttgagaattgatatca |
5980563 |
T |
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| Q |
213 |
attgatgggaataattaacactttagcagtcatatcctgttttgtccaaaaaat |
266 |
Q |
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| T |
5980562 |
attgatgggaataattaacactttaacagtcatattctgttttgtccaaaaaat |
5980509 |
T |
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