View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_high_23 (Length: 279)
Name: NF3934_high_23
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 49171114 - 49170918
Alignment:
| Q |
18 |
agaaccagcacctcagcctgagcaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaagttgattagagccaaaatcaat |
117 |
Q |
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| T |
49171114 |
agaaccagcacctcagcctgaggaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaagttgattagagccaaaatcaat |
49171015 |
T |
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| Q |
118 |
gtatgcgatgttccatttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttaccatttaaattgcaacatggttttaaattt |
214 |
Q |
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| T |
49171014 |
gtatgcgatgttccgtttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttaccatttaaattgcaacatggttttaaattt |
49170918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 49179009 - 49179178
Alignment:
| Q |
18 |
agaaccagcacctcagcctgagcaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaagttgattagagccaaaatcaat |
117 |
Q |
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| T |
49179009 |
agaaccaacacctgagcctgatgaggtttttactcttagtaaagccaccgccactggagagtttaaaatcttacccaagttgatcagagttcaaatcaat |
49179108 |
T |
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| Q |
118 |
gtatgcgatgttccatttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttacca |
187 |
Q |
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| T |
49179109 |
gcagacgaggttccgtttagagcaattcacaatgtcgagtttttagcactcactgtaagttaagttacca |
49179178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 49170891 - 49170828
Alignment:
| Q |
205 |
ttttaaatttcatgagcaggcttactaatccagagatcaatttctataacagaggctctcctat |
268 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49170891 |
ttttgaatttcatgagcaggcttactgatccagagatcaatttctataacagaggctctcctat |
49170828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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