View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_high_29 (Length: 249)
Name: NF3934_high_29
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 52308249 - 52308455
Alignment:
| Q |
1 |
tttagattatataccatcaaaacaatctcatatgttgatcttagatcaaacggtcggaacaagcaattgtgtgacgtagttagtgcattaatatgaatcc |
100 |
Q |
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| T |
52308249 |
tttagattatataccatcaaaacaatctcatatgttgatcttagatcaaacggtctgaacaagcaattgtgtgacgtagttagtgcattaatatgaatcc |
52308348 |
T |
|
| Q |
101 |
atgataattctacattgaacatagagtcgcatgcggtcatgcggatccgataaggtgtgagggtatacacctgcacaccctaaagttttcaaatttgcac |
200 |
Q |
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| T |
52308349 |
atgataattctacattgaacatagagtc--------acgtgcggatccgataaggtgtgagggtacacacctgcacacccaatagttttcaaatttgcac |
52308440 |
T |
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| Q |
201 |
cagcaatcctatttt |
215 |
Q |
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||||||||||||||| |
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| T |
52308441 |
cagcaatcctatttt |
52308455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 28285857 - 28285803
Alignment:
| Q |
154 |
ggtgtgagggtatacacctgcacaccctaaagttttcaaatttgcaccagcaatc |
208 |
Q |
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| T |
28285857 |
ggtgtgagggtgtgcacctgcacaccctaaattttgaaaatttgcaccagtaatc |
28285803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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