View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_high_3 (Length: 911)
Name: NF3934_high_3
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_high_3 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] scaffold0938 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 746; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 14 - 895
Target Start/End: Original strand, 22103922 - 22104803
Alignment:
| Q |
14 |
aggtatggcatcgacaggtttgacagcaggcctcgcagtagggtcaatttgcgtgttgatcaattgcccagggatagggttttgcatgagtatggacgtg |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22103922 |
aggtatggcaccgacaggtttgacagcaggcctcgcagtagggtcagtttgcgtgttgatcaattgcccagggttagggttttgcatgagtatggacgtg |
22104021 |
T |
|
| Q |
114 |
gacggtcattgacacactgtcgtgatcgtccgttttcgtgtacgagggagggtgttatcaaatcgagggaggatcagtacatgcaagagggagactcacg |
213 |
Q |
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|| |||||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |
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| T |
22104022 |
gatggtcattgacacaccgtcgtgatcgtccgtttttgggtacgagggagggtgttatcgaatcgagggaggatcagtacaggcaagagggagactcgtg |
22104121 |
T |
|
| Q |
214 |
catcagcaatgcaggcataggctcaaaactgtcaaaaatcacaactgctgaagataagagtggcaacgctccagcagtgtcaactcaggtatctgctgtg |
313 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22104122 |
tataagcaatgcaggcataggctcaaaactgtcaaaaaccacaactgctgaagatgagagtggcaacgctccagcagtgtcaactcaggtatctgctgtg |
22104221 |
T |
|
| Q |
314 |
tattacattaccaattttcccaatagattgatgtataaattcaaagaaagtgatggtgaaggagctagttaatggcgctgatgttgaaaagaaagtgatg |
413 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22104222 |
tattacattacaaattttcctaatagattgatgtataaattcaaagaaagtgatggtgaaggagctagttaatggcgctgatgttgaaaagaaagtgatg |
22104321 |
T |
|
| Q |
414 |
tgtaaattcatgccgttcacagatgacattacttgggcctccaagagtattttagcaagactaaaaaatgacttttgcttgtctattgttcaacaagctt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
22104322 |
tgtaaattcatgccgttcacagatgacattacttgggcatccaagagtattttagcaagacttaaaaatgacttttgcttgtatattgttcaacaagctt |
22104421 |
T |
|
| Q |
514 |
tcgttgatgcggagtttgtggatttcaagcttatttctttgggtggagacaatgttgttttgcatccaggtgtcgaaggtgatgctatggaacttttcaa |
613 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22104422 |
tcgttgatgtggggtttgtggatttcaagcttatttctttgggtgaagacaatgttgttttgcatccgggtgtcgaaggtgatgctatggaacttttcaa |
22104521 |
T |
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| Q |
614 |
ggcggcagttgattttattggtaattttttggatgattgtagaccttggacgttggattctattgtgaactatgagaggggatcatgggtgagatgttat |
713 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22104522 |
ggcggcggctgattttattggtaattttttggatgattgtagaccctggatgttggattctattgtgaactatgagaggggagcatgggtgagatgttat |
22104621 |
T |
|
| Q |
714 |
ggagtgcctcttcatgtatggaatgaaattttctttctggagttggcggcaacacaaggccgacttttaaaaattgatgattgtactactaataaggata |
813 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22104622 |
ggagtgcctcttcatgtatggaatgacattttctttctggagttggcggcaacacaaggccgacttttaaaaattgatgattgtactactaataaggata |
22104721 |
T |
|
| Q |
814 |
ggttggattatgctcgtttgttaatctctactcattctttgaaagaaattaatgttattgaaaaggtgtggatcgacagtcg |
895 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
22104722 |
ggttggattatgcttgtttgttaatctctactccttctttgaaagaaattaatgttattgaaaaggtgtggattgacggtcg |
22104803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 623 - 826
Target Start/End: Complemental strand, 13880 - 13677
Alignment:
| Q |
623 |
tgattttattggtaattttttggatgattgtagaccttggacgttggattctattgtgaactatgagaggggatcatgggtgagatgttatggagtgcct |
722 |
Q |
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|||||| ||||||||||||||||| || ||||||||||||||| ||| | ||||||| ||||||||||| | ||||||| ||||| ||| |||||| |
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| T |
13880 |
tgatttgattggtaattttttggacgagtgtagaccttggacgaaggagacggttgtgaattatgagaggggtgcttgggtgacatgttttggggtgcct |
13781 |
T |
|
| Q |
723 |
cttcatgtatggaatgaaattttctttctggagttggcggcaacacaaggccgacttttaaaaattgatgattgtactactaataaggataggttggatt |
822 |
Q |
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||||| | ||||||| || |||||| | ||| |||| |||||||||| || || | ||||| ||||||||||||| ||| | |||| | |||||| |
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| T |
13780 |
cttcaagcatggaatattatcttctttttcgagctggcaacaacacaaggtagagttcttaaaatagatgattgtactattaacgaagatatgatggatt |
13681 |
T |
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| Q |
823 |
atgc |
826 |
Q |
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|||| |
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| T |
13680 |
atgc |
13677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 699 - 886
Target Start/End: Complemental strand, 23366 - 23179
Alignment:
| Q |
699 |
tgggtgagatgttatggagtgcctcttcatgtatggaatgaaattttctttctggagttggcggcaacacaaggccgacttttaaaaattgatgattgta |
798 |
Q |
| |
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||||||| ||||| ||| ||||||||| | | |||||| | || |||||| ||||| |||| |||||||||| ||||| | ||||| ||||||||| |
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| T |
23366 |
tgggtgacatgttttggggtgcctctttaagcatggaacaatatcttctttttggagctggcaacaacacaaggtagacttcttaaaataaatgattgta |
23267 |
T |
|
| Q |
799 |
ctactaataaggataggttggattatgctcgtttgttaatctctactcattctttgaaagaaattaatgttattgaaaaggtgtggat |
886 |
Q |
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||| ||| || |||||| |||||||| |||| || |||| |||||| || ||||||||||| |||||| ||| |||||||||| |
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| T |
23266 |
ctattaacaaagataggatggattatcctcggtttctaattgctactcctttgttgaaagaaataaatgtttccgaagaggtgtggat |
23179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 699 - 886
Target Start/End: Complemental strand, 33534 - 33347
Alignment:
| Q |
699 |
tgggtgagatgttatggagtgcctcttcatgtatggaatgaaattttctttctggagttggcggcaacacaaggccgacttttaaaaattgatgattgta |
798 |
Q |
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||||||| ||||| ||| ||||||||| | | |||||| | || |||||| ||||| |||| |||||||||| ||||| | ||||| ||||||||| |
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| T |
33534 |
tgggtgacatgttttggggtgcctctttaagcatggaacaatatcttctttttggagctggcaacaacacaaggtagacttcttaaaataaatgattgta |
33435 |
T |
|
| Q |
799 |
ctactaataaggataggttggattatgctcgtttgttaatctctactcattctttgaaagaaattaatgttattgaaaaggtgtggat |
886 |
Q |
| |
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||| ||| || |||||| |||||||| |||| || |||| |||||| || ||||||||||| |||||| ||| |||||||||| |
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| T |
33434 |
ctattaacaaagataggatggattatcctcggtttctaattgctactcctttgttgaaagaaataaatgtttccgaagaggtgtggat |
33347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0938 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0938
Description:
Target: scaffold0938; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 699 - 886
Target Start/End: Original strand, 1086 - 1273
Alignment:
| Q |
699 |
tgggtgagatgttatggagtgcctcttcatgtatggaatgaaattttctttctggagttggcggcaacacaaggccgacttttaaaaattgatgattgta |
798 |
Q |
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||||||| ||||| ||| ||||||||| | | |||||| | || |||||| ||||| |||| |||||||||| ||||| | ||||| ||||||||| |
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| T |
1086 |
tgggtgacatgttttggggtgcctctttaagcatggaacaatatcttctttttggagctggcaacaacacaaggtagacttcttaaaataaatgattgta |
1185 |
T |
|
| Q |
799 |
ctactaataaggataggttggattatgctcgtttgttaatctctactcattctttgaaagaaattaatgttattgaaaaggtgtggat |
886 |
Q |
| |
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||| ||| || |||||| |||||||| |||| || |||| |||||| || ||||||||||| |||||| ||| |||||||||| |
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| T |
1186 |
ctattaacaaagataggatggattatcctcggtttctaattgctactcctttgttgaaagaaataaatgtttccgaagaggtgtggat |
1273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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