View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_10 (Length: 464)
Name: NF3934_low_10
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 48641998 - 48641561
Alignment:
| Q |
1 |
aggaggcatgttttgaaggatgcaatgcaggtatatgatttaagatttcaaccataagtatataataataaaaccaaaataatctattaataaaggaaac |
100 |
Q |
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| T |
48641998 |
aggaggcatgttttgaaggatgcaatgcaggtatatgatttaagatttcaaccataagtatataataataaaaccaaaataatctattaataaaggaaac |
48641899 |
T |
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| Q |
101 |
caaagcatcaccttataatggtaccctgctgccaccttcttccgggagacttctttttacctttgccaaatgtccaaccagtaggagagaaagcaactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48641898 |
caaagcatcaccttataatggtaccctgctgccaccttcttccgggagacttctttttacctttgccaaatgtccaaccagtaggagagaaagcaactat |
48641799 |
T |
|
| Q |
201 |
aaggctgaaccgactctgcatnnnnnnnnnnnnnnnnnnnntacatctgatggttagaaatgtgaaattaaaactaaaaagatatgttattcggtatcaa |
300 |
Q |
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| T |
48641798 |
aaggctgaaccgactctgcat-----------aaaaaaaaatacatctgatggttagaaatgtgaaattaaaactaaaaagatacgttattcggtatcaa |
48641710 |
T |
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| Q |
301 |
ccatcagattcgaaagctgtaaaactgcttagcaggtagaccaggtagcaactgtggatcctttatcagccaacaaggcattttggcatggaatagttat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48641709 |
ccatcagattcgaaagctgtaaaactgcttagcaggtagaccaggtagcaactgtggatcctttatcagccaacaaggcattttggcatggaatagttat |
48641610 |
T |
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| Q |
401 |
cagacaagatcagattgaagcaagaaagaatattagtatatgtagataa |
449 |
Q |
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| T |
48641609 |
cagacaagatcagattgaagcaagaaagaatattagtatatgtagataa |
48641561 |
T |
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