View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3934_low_11 (Length: 450)

Name: NF3934_low_11
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3934_low_11
NF3934_low_11
[»] chr8 (6 HSPs)
chr8 (6-434)||(40417387-40417826)
chr8 (189-253)||(4715308-4715372)
chr8 (208-254)||(4154747-4154793)
chr8 (226-256)||(34219232-34219262)
chr8 (226-254)||(4154379-4154407)
chr8 (207-255)||(40991783-40991831)
[»] chr4 (5 HSPs)
chr4 (347-391)||(12197458-12197502)
chr4 (208-254)||(28034260-28034306)
chr4 (190-254)||(34544137-34544201)
chr4 (338-382)||(39099765-39099809)
chr4 (222-251)||(18975898-18975927)
[»] chr3 (2 HSPs)
chr3 (333-396)||(54769629-54769693)
chr3 (336-396)||(25317244-25317304)
[»] chr1 (1 HSPs)
chr1 (182-254)||(50556482-50556554)
[»] chr2 (8 HSPs)
chr2 (184-254)||(29874080-29874150)
chr2 (334-383)||(8904527-8904576)
chr2 (189-254)||(33561513-33561578)
chr2 (209-255)||(2336654-2336700)
chr2 (209-251)||(34481300-34481342)
chr2 (189-254)||(962629-962694)
chr2 (226-255)||(13154480-13154509)
chr2 (189-254)||(30323495-30323560)
[»] chr5 (3 HSPs)
chr5 (189-254)||(36521958-36522023)
chr5 (189-254)||(36522299-36522364)
chr5 (360-431)||(13786037-13786108)
[»] chr7 (5 HSPs)
chr7 (350-396)||(15902386-15902432)
chr7 (226-255)||(42282117-42282146)
chr7 (226-254)||(10341863-10341891)
chr7 (345-377)||(28483858-28483890)
chr7 (333-393)||(42730405-42730464)
[»] chr6 (5 HSPs)
chr6 (333-383)||(30618626-30618676)
chr6 (222-251)||(8481960-8481989)
chr6 (226-254)||(6071163-6071191)
chr6 (226-254)||(33605685-33605713)
chr6 (226-254)||(33606006-33606034)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 434
Target Start/End: Original strand, 40417387 - 40417826
Alignment:
Q  6 agtgaaaattatgttggagataaagtcattcctagacatgtgagtagtttagtgttccttgaattaattatctaagtgatatcatagaagtgtggttatt 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  40417387 agtgaaaattatgttagagataaagtcattcctagacatgtgagtagtttagtgttctttgaattaattatctaactgatatcatagtagtgtggttatt 40417486  T
Q  106 gttgggtcacgaagggagtccaagggaccatccacattagacatgagtaactatataagtgaaaaacatagcacatttttattcaaaaccttaagataat 205  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40417487 gttgggtcacgaagggagcccaagggaccacccacattaaacatgagcaactatataagtgaaaaatatagcacatttttattcaaaaccttaagataat 40417586  T
Q  206 tgg-----------tttataggttctatcatttataaagtgttcaacctccacttttctaacaaatataaaatattcagcctcaacttttctaattgatg 294  Q
    |||           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40417587 tggtttatagttggtttataggttctattatttataaagtgttcaacctccacttttctaacaaatataaaatattcaacctcaacttttctaattgatg 40417686  T
Q  295 tggaacttctaattcactcttgctagacaacaatctttcccacattaggcaagagcaatcacacaagtgagagaaacaccacacttttatctaaaacttt 394  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||    
T  40417687 tggaacttctaattcactcttgctacacaacaatctttccgacattaggcaagagcaatcacacaagtgagagagacaccacacttttatccaaaatctt 40417786  T
Q  395 aatccaatagatttacaagtcatcttacttataaagtatc 434  Q
    ||  |||| ||||||| |||||||||||||||||||||||    
T  40417787 aacgcaatggatttacgagtcatcttacttataaagtatc 40417826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 4715372 - 4715308
Alignment:
Q  189 caaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttct 253  Q
    ||||| |||||||||||  |||||||| |  | ||||||||||||||||||||||||||||||||    
T  4715372 caaaatcttaagataatgagtttatagatcgtctcatttataaagtgttcaacctccacttttct 4715308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 4154747 - 4154793
Alignment:
Q  208 gtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    |||||| ||| || ||| |||||||||||||||||||||||||||||    
T  4154747 gtttatgggtcctttcacttataaagtgttcaacctccacttttcta 4154793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 34219232 - 34219262
Alignment:
Q  226 ttataaagtgttcaacctccacttttctaac 256  Q
    |||||||||||||||||||||||||||||||    
T  34219232 ttataaagtgttcaacctccacttttctaac 34219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 4154379 - 4154407
Alignment:
Q  226 ttataaagtgttcaacctccacttttcta 254  Q
    |||||||||||||||||||||||||||||    
T  4154379 ttataaagtgttcaacctccacttttcta 4154407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 40991831 - 40991783
Alignment:
Q  207 ggtttataggttctatcatttataaagtgttcaacctccacttttctaa 255  Q
    ||||||| ||| || ||| |||| |||||||||||||||||||||||||    
T  40991831 ggtttatgggtcctctcacttatgaagtgttcaacctccacttttctaa 40991783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 12197502 - 12197458
Alignment:
Q  347 gagcaatcacacaagtgagagaaacaccacacttttatctaaaac 391  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  12197502 gagcaaccacacaagtgagagaaacaccacacttttatccaaaac 12197458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 28034306 - 28034260
Alignment:
Q  208 gtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||    
T  28034306 gtttatgggttctctcacttataaagtgttcaacctccacttttcta 28034260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 34544201 - 34544137
Alignment:
Q  190 aaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    |||||||||||  |||  |||||| ||| || |||||||||||||| ||||||||||||||||||    
T  34544201 aaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccacttttcta 34544137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 39099765 - 39099809
Alignment:
Q  338 attaggcaagagcaatcacacaagtgagagaaacaccacactttt 382  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||    
T  39099765 attaggcaagagcaaccacacaagtgagagagacaccacgctttt 39099809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 18975898 - 18975927
Alignment:
Q  222 tcatttataaagtgttcaacctccactttt 251  Q
    ||||||||||||||||||||||||||||||    
T  18975898 tcatttataaagtgttcaacctccactttt 18975927  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 54769629 - 54769693
Alignment:
Q  333 cccacattaggcaagagcaatcacacaagtgagagaaacacca-cacttttatctaaaactttaa 396  Q
    |||||||||||||||||||| |||| |||| ||||| |||||| ||||||||||||||| |||||    
T  54769629 cccacattaggcaagagcaaccacataagtaagagagacaccaccacttttatctaaaattttaa 54769693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 25317304 - 25317244
Alignment:
Q  336 acattaggcaagagcaatcacacaagtgagagaaacaccacacttttatctaaaactttaa 396  Q
    ||||||||||  ||||| ||||||||||||||| |||| ||||||||| | ||||| ||||    
T  25317304 acattaggcagaagcaaccacacaagtgagagacacactacacttttacccaaaaccttaa 25317244  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 50556554 - 50556482
Alignment:
Q  182 ttttattcaaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    |||||||||||||||||||| ||| ||||||  | |||| ||| ||||||| |||||||||||| ||||||||    
T  50556554 ttttattcaaaaccttaagaaaataggtttacggattctctcacttataaattgttcaacctccgcttttcta 50556482  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 29874080 - 29874150
Alignment:
Q  184 ttattcaaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    |||| ||||||||||||  ||| ||||||| ||| ||  || |||||||||||||||||||||||||||||    
T  29874080 ttatccaaaaccttaaggcaatgggtttatgggtcctcccaattataaagtgttcaacctccacttttcta 29874150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 8904576 - 8904527
Alignment:
Q  334 ccacattaggcaagagcaatcacacaagtgagagaaacaccacactttta 383  Q
    ||||||||||||||||||||  || |||||||||| ||||||||||||||    
T  8904576 ccacattaggcaagagcaatagcataagtgagagagacaccacactttta 8904527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 33561513 - 33561578
Alignment:
Q  189 caaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    ||||||||||||| |||  |||||| ||| || ||| |||||||||||| ||||||||||||||||    
T  33561513 caaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccacttttcta 33561578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 2336700 - 2336654
Alignment:
Q  209 tttataggttctatcatttataaagtgttcaacctccacttttctaa 255  Q
    ||||| ||| || ||| ||||||||||||||||||||||||||||||    
T  2336700 tttatgggtcctctcacttataaagtgttcaacctccacttttctaa 2336654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 34481342 - 34481300
Alignment:
Q  209 tttataggttctatcatttataaagtgttcaacctccactttt 251  Q
    ||||||| |||||||||||||||| | ||||||||||||||||    
T  34481342 tttatagattctatcatttataaaatattcaacctccactttt 34481300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 962694 - 962629
Alignment:
Q  189 caaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    ||||||||||||| ||| ||||||| ||| || ||| |||||| |||||||||||  |||||||||    
T  962694 caaaaccttaagacaatgggtttatgggtcctctcacttataaggtgttcaacctttacttttcta 962629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 13154480 - 13154509
Alignment:
Q  226 ttataaagtgttcaacctccacttttctaa 255  Q
    ||||||||||||||||||||||||||||||    
T  13154480 ttataaagtgttcaacctccacttttctaa 13154509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 30323560 - 30323495
Alignment:
Q  189 caaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    ||||||||||||  |||  |||||||||| || ||| || |||||||||||||||||| |||||||    
T  30323560 caaaaccttaaggcaatgagtttataggtcctctcacttctaaagtgttcaacctccaattttcta 30323495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 36521958 - 36522023
Alignment:
Q  189 caaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    ||||||||||||  ||||||||||| ||| || ||||||| | ||||||||||||| |||||||||    
T  36521958 caaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaacttttcta 36522023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 36522299 - 36522364
Alignment:
Q  189 caaaaccttaagataattggtttataggttctatcatttataaagtgttcaacctccacttttcta 254  Q
    ||||||||||||||||| ||||||| ||| || ||| ||||||| |||||||| |||| |||||||    
T  36522299 caaaaccttaagataatgggtttattggtcctctcacttataaaatgttcaacttccatttttcta 36522364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 431
Target Start/End: Original strand, 13786037 - 13786108
Alignment:
Q  360 agtgagagaaacaccacacttttatctaaaactttaatccaatagatttacaagtcatcttacttataaagt 431  Q
    ||||||||| ||| |||||| ||||| ||||  ||||  ||||||||||||  |||||||||||||||||||    
T  13786037 agtgagagagacatcacactcttatccaaaatcttaagacaatagatttacgggtcatcttacttataaagt 13786108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 15902432 - 15902386
Alignment:
Q  350 caatcacacaagtgagagaaacaccacacttttatctaaaactttaa 396  Q
    ||||||||||||||||||  |||||||||||||||| ||||| ||||    
T  15902432 caatcacacaagtgagagcgacaccacacttttatccaaaaccttaa 15902386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 42282117 - 42282146
Alignment:
Q  226 ttataaagtgttcaacctccacttttctaa 255  Q
    ||||||||||||||||||||||||||||||    
T  42282117 ttataaagtgttcaacctccacttttctaa 42282146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 10341891 - 10341863
Alignment:
Q  226 ttataaagtgttcaacctccacttttcta 254  Q
    |||||||||||||||||||||||||||||    
T  10341891 ttataaagtgttcaacctccacttttcta 10341863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 28483890 - 28483858
Alignment:
Q  345 aagagcaatcacacaagtgagagaaacaccaca 377  Q
    |||||||| ||||||||||||||||||||||||    
T  28483890 aagagcaaccacacaagtgagagaaacaccaca 28483858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 42730464 - 42730405
Alignment:
Q  333 cccacattaggcaagagcaatcacacaagtgagagaaacaccacacttttatctaaaactt 393  Q
    |||||||| |||||||  || |||||| |||||||||||| |||||||||||| |||||||    
T  42730464 cccacatttggcaagaaaaaccacacatgtgagagaaaca-cacacttttatccaaaactt 42730405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 30618626 - 30618676
Alignment:
Q  333 cccacattaggcaagagcaatcacacaagtgagagaaacaccacactttta 383  Q
    |||||||||||||||||||| |||| |||| ||||| |||||||| |||||    
T  30618626 cccacattaggcaagagcaaccacataagtaagagagacaccacattttta 30618676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 8481989 - 8481960
Alignment:
Q  222 tcatttataaagtgttcaacctccactttt 251  Q
    ||||||||||||||||||||||||||||||    
T  8481989 tcatttataaagtgttcaacctccactttt 8481960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 6071191 - 6071163
Alignment:
Q  226 ttataaagtgttcaacctccacttttcta 254  Q
    |||||||||||||||||||||||||||||    
T  6071191 ttataaagtgttcaacctccacttttcta 6071163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 33605713 - 33605685
Alignment:
Q  226 ttataaagtgttcaacctccacttttcta 254  Q
    |||||||||||||||||||||||||||||    
T  33605713 ttataaagtgttcaacctccacttttcta 33605685  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 33606034 - 33606006
Alignment:
Q  226 ttataaagtgttcaacctccacttttcta 254  Q
    |||||||||||||||||||||||||||||    
T  33606034 ttataaagtgttcaacctccacttttcta 33606006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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