View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3934_low_15 (Length: 357)

Name: NF3934_low_15
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3934_low_15
NF3934_low_15
[»] chr7 (10 HSPs)
chr7 (18-357)||(8365029-8365370)
chr7 (73-206)||(8356749-8356880)
chr7 (122-264)||(8427432-8427574)
chr7 (73-231)||(8351560-8351715)
chr7 (73-231)||(8412831-8412985)
chr7 (136-199)||(8531502-8531565)
chr7 (320-357)||(8356987-8357024)
chr7 (320-357)||(8531810-8531847)
chr7 (72-118)||(8446249-8446295)
chr7 (69-155)||(8420290-8420372)
[»] scaffold0141 (2 HSPs)
scaffold0141 (18-111)||(9068-9161)
scaffold0141 (192-264)||(9169-9241)
[»] chr4 (1 HSPs)
chr4 (320-356)||(7287236-7287272)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 8365029 - 8365370
Alignment:
Q  18 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcgaaccaacaaatgcttcaatcttcttctaatcatgatccaatctaaaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8365029 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcgaaccaacaaatgcttcaatcttcttctaatcatgatccaatctaaaatc 8365128  T
Q  118 cgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaaccatagttactgctacatgcattcattctctaaatgctttattat 217  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||  |    
T  8365129 cgt--catgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaaccata----ctgctacatgcattcattctctaaatgctttatatt 8365222  T
Q  218 gtttaatatgatttgattattgtttcatttggatattgacacctttaattatcaacgaggaaggcagtatttttagttctaaaaatgtataac------- 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           
T  8365223 gtttaatatgatttgattattgtttcatttggatattgacacctttaattatcaacgatgaaggcagtatttttagttctaaaaatgtataactgatcaa 8365322  T
Q  311 -tctttcaaattctagtatttttacaatgttggattagattctaggac 357  Q
     || |||||||||||||||||||||||||||||||||  |||||||||    
T  8365323 ttccttcaaattctagtatttttacaatgttggattaacttctaggac 8365370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 8356749 - 8356880
Alignment:
Q  73 aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaa 172  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| | |  ||||||||||||  ||||||||| |||||||||||| || ||||||||||    
T  8356749 aacaaatgcttcaatctttttctaatcatgttccgatctaaaattcat--catgagaaatactaaaggagatgcgaaaaaataaaccacgacatcagaaa 8356846  T
Q  173 ccatagttactgctacatgcattcattctctaaa 206  Q
    | | ||||||||||||||||||||||||||||||    
T  8356847 ctacagttactgctacatgcattcattctctaaa 8356880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 122 - 264
Target Start/End: Complemental strand, 8427574 - 8427432
Alignment:
Q  122 tcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaaccatagttactgctacatgcattcattctctaaatgctttattatgttt 221  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||| || |||||||||||||  ||||||||||||  |||||    
T  8427574 tcatgagaaatactgaaggagatgagaaaaaataaaccactacatcagaaaccacagttactactgcatgcattcattcattaaatgctttatactgttt 8427475  T
Q  222 aatatgatttgattattgtttcatttggatattgacaccttta 264  Q
    || |||||||| | ||||||| ||||  |||||||| ||||||    
T  8427474 aaaatgatttgctgattgtttgatttcaatattgactccttta 8427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 8351560 - 8351715
Alignment:
Q  73 aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaa 172  Q
    ||||||| |||||||||| ||||||| ||| ||| ||||||||| | |  |||||||||||  |||||||||| |||||||||||| || |||||||||     
T  8351560 aacaaattcttcaatctttttctaataatgttcctatctaaaattcat--catgagaaatattgaaggagatgcgaaaaaataaaccactacatcagaac 8351657  T
Q  173 ccatagttactgctacatgcattcattctctaaatgctttattatgtttaatatgattt 231  Q
    ||| ||||||||||||||||||||||||| ||||  |||||| | ||||||||||||||    
T  8351658 ccacagttactgctacatgcattcattct-taaaatctttataaagtttaatatgattt 8351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 8412831 - 8412985
Alignment:
Q  73 aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaa 172  Q
    |||||||||||||||||| ||||||| ||| ||  ||||||||| | |  |||||||||||  |||||||||| |||||||||||| || |  ||||||     
T  8412831 aacaaatgcttcaatctttttctaattatgttcgtatctaaaattcat--catgagaaatattgaaggagatgcgaaaaaataaaccacta--tcagaag 8412926  T
Q  173 ccatagttactgctacatgcattcattctctaaatgctttattatgtttaatatgattt 231  Q
    ||| |||||||||| ||||||||||||| |||||  |||||| | ||||||||||||||    
T  8412927 ccacagttactgctgcatgcattcattcactaaaatctttataaagtttaatatgattt 8412985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 8531502 - 8531565
Alignment:
Q  136 gaaggagatgagaaaaaataaacaacaacatcagaaaccatagttactgctacatgcattcatt 199  Q
    ||||||||||||||||||||||| || ||||| || |||| |||||| ||||||||||||||||    
T  8531502 gaaggagatgagaaaaaataaaccactacatcggataccacagttacggctacatgcattcatt 8531565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 8356987 - 8357024
Alignment:
Q  320 ttctagtatttttacaatgttggattagattctaggac 357  Q
    |||||||||||||||||||||| |||||||||||||||    
T  8356987 ttctagtatttttacaatgttgaattagattctaggac 8357024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 8531810 - 8531847
Alignment:
Q  320 ttctagtatttttacaatgttggattagattctaggac 357  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8531810 ttctagtatttttccaatgttggattagattctaggac 8531847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 8446249 - 8446295
Alignment:
Q  72 caacaaatgcttcaatcttcttctaatcatgatccaatctaaaatcc 118  Q
    |||||||||||||||||||||||||||||  ||| ||||| ||||||    
T  8446249 caacaaatgcttcaatcttcttctaatcacaatcaaatctgaaatcc 8446295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 8420290 - 8420372
Alignment:
Q  69 aaccaacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaata 155  Q
    ||||| ||||||| || |||||||||||||||   |||||||||||||||   |||||| || ||  ||||||||||||||||||||    
T  8420290 aaccatcaaatgcgtcgatcttcttctaatca--ctccaatctaaaatcc--atcatgaaaattattgaaggagatgagaaaaaata 8420372  T

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Target: scaffold0141 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 9068 - 9161
Alignment:
Q  18 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcgaaccaacaaatgcttcaatcttcttctaatcatgatccaatct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| ||||||||||||    
T  9068 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcaaaccaacgaatgcttcaattttcttcgaattatgatccaatct 9161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 9169 - 9241
Alignment:
Q  192 cattcattctctaaatgctttattatgtttaatatgatttgattattgtttcatttggatattgacaccttta 264  Q
    |||||||||||||||||||||||  ||||||| |||||||| |  |||||| ||||  |||||||| ||||||    
T  9169 cattcattctctaaatgctttatactgtttaaaatgatttgctgtttgtttgatttcaatattgactccttta 9241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 7287272 - 7287236
Alignment:
Q  320 ttctagtatttttacaatgttggattagattctagga 356  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  7287272 ttctactatttttacaatcttggattagattctagga 7287236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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