View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_16 (Length: 312)
Name: NF3934_low_16
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 36523296 - 36523018
Alignment:
| Q |
19 |
caaccagcatccatgcctctaaagtagggatcaacaaagtgaaattgatgagataaatctgacacatttcttttgcagccatcaacttcaataccttttg |
118 |
Q |
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| T |
36523296 |
caaccagcatccatgcctctaaagtagggatcaacaaagtgaaattgatgagataaatctgacacatttcttttgcagccatcaacttcaataccttttg |
36523197 |
T |
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| Q |
119 |
ttctctgctttaccttaatcatatttgt-----nnnnnnnnnnntgatttcatttcaccattggactaattaagtttattcacaattcacatttgnnnnn |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523196 |
ttctctgctttaccttaatcatatttgtaaaaaaaaaaaaaaaaagatttcatttcaccattggactaattaagtttattcacaattcacatttgaaaac |
36523097 |
T |
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| Q |
214 |
nntaaaatctacaaaacttctatatgaatttagtaatttacctctgagaaaggactaaccaatggatctaacttctgtg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36523096 |
aataaaatctacaaaacttctatatgaatttagtaatttacctctgagaaaggactaaccaatggatctaacttttgtg |
36523018 |
T |
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