View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_17 (Length: 309)
Name: NF3934_low_17
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 27422930 - 27422800
Alignment:
| Q |
160 |
accccctacaacacaatttgtcagctacaaagcagtagccaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
259 |
Q |
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| T |
27422930 |
accccgtacaacacaatttgtcagctacaaagcagtagccaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
27422831 |
T |
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| Q |
260 |
agacttcaacaagccaaaataggtaaggaat |
290 |
Q |
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| T |
27422830 |
agacttcaacaagccaaaataggtaaggaat |
27422800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 27423146 - 27423075
Alignment:
| Q |
69 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
140 |
Q |
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| T |
27423146 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
27423075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 27423184 - 27423147
Alignment:
| Q |
2 |
ggaagcaaaagaatgcttgcagctcgcgaatgtgtgta |
39 |
Q |
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| T |
27423184 |
ggaagcaaaagaatgcttgcagctcgcgaatgtgtgta |
27423147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 19683587 - 19683629
Alignment:
| Q |
237 |
tccacctgttaataagcggctaaagacttcaacaagccaaaata |
280 |
Q |
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| T |
19683587 |
tccacctgttaataagcagctaaagacttcaa-aagccaaaata |
19683629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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