View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3934_low_18 (Length: 304)

Name: NF3934_low_18
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3934_low_18
NF3934_low_18
[»] chr3 (4 HSPs)
chr3 (1-222)||(53576374-53576596)
chr3 (1-222)||(52056764-52056986)
chr3 (177-222)||(52051439-52051484)
chr3 (177-222)||(53568797-53568842)
[»] chr2 (2 HSPs)
chr2 (1-222)||(30201519-30201741)
chr2 (177-222)||(30194042-30194087)
[»] chr1 (4 HSPs)
chr1 (1-222)||(31352881-31353103)
chr1 (1-222)||(16990169-16990390)
chr1 (177-222)||(31358387-31358432)
chr1 (177-222)||(16995127-16995172)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-222)||(467355-467577)
scaffold0002 (177-222)||(462029-462074)
[»] chr5 (2 HSPs)
chr5 (1-222)||(35895343-35895565)
chr5 (177-222)||(35900846-35900891)
[»] chr4 (1 HSPs)
chr4 (2-154)||(20274017-20274168)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 53576374 - 53576596
Alignment:
Q  1 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaa-acaatagaggtacctgagatttgagacaatcgaaaaagtaaataagggca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53576374 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggca 53576473  T
Q  100 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttcccaggtagaaacaaaataacgcgcgcacgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  53576474 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacgatgaataacttccctggtagaaacaaaataacgcgcgcacgac 53576573  T
Q  200 atgctgtaattgggcagttttca 222  Q
    ||| |||||||||||||||||||    
T  53576574 atgatgtaattgggcagttttca 53576596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52056764 - 52056986
Alignment:
Q  1 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaa-acaatagaggtacctgagatttgagacaatcgaaaaagtaaataagggca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52056764 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggca 52056863  T
Q  100 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttcccaggtagaaacaaaataacgcgcgcacgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  52056864 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacgatgaataacttccctggtagaaacaaaataacgcgcgcacgac 52056963  T
Q  200 atgctgtaattgggcagttttca 222  Q
    ||| |||||||| ||||||||||    
T  52056964 atgatgtaattgagcagttttca 52056986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 52051484 - 52051439
Alignment:
Q  177 aaacaaaataacgcgcgcacgacatgctgtaattgggcagttttca 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  52051484 aaacaaaataacgcgcgcacgacatgatgtaattgggcagttttca 52051439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 53568842 - 53568797
Alignment:
Q  177 aaacaaaataacgcgcgcacgacatgctgtaattgggcagttttca 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  53568842 aaacaaaataacgcgcgcacgacatgatgtaattgggcagttttca 53568797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30201519 - 30201741
Alignment:
Q  1 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaa-acaatagaggtacctgagatttgagacaatcgaaaaagtaaataagggca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30201519 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggca 30201618  T
Q  100 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttcccaggtagaaacaaaataacgcgcgcacgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  30201619 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacgatgaataacttccctggtagaaacaaaataacgcgcgcacgac 30201718  T
Q  200 atgctgtaattgggcagttttca 222  Q
    ||| |||||||||||||||||||    
T  30201719 atgatgtaattgggcagttttca 30201741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 30194087 - 30194042
Alignment:
Q  177 aaacaaaataacgcgcgcacgacatgctgtaattgggcagttttca 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  30194087 aaacaaaataacgcgcgcacgacatgatgtaattgggcagttttca 30194042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31353103 - 31352881
Alignment:
Q  1 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaa-caatagaggtacctgagatttgagacaatcgaaaaagtaaataagggca 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31353103 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggca 31353004  T
Q  100 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttcccaggtagaaacaaaataacgcgcgcacgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  31353003 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacgatgaataacttccctggtagaaacaaaataacgcgcgcacgac 31352904  T
Q  200 atgctgtaattgggcagttttca 222  Q
    ||| |||||||||||||||||||    
T  31352903 atgatgtaattgggcagttttca 31352881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16990390 - 16990169
Alignment:
Q  1 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaacaatagaggtacctgagatttgagacaatcgaaaaagtaaataagggcaa 100  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16990390 taaaagaaatggatcaacatatgaaattagttatgaccaatggagaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggcaa 16990291  T
Q  101 ttgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttcccaggtagaaacaaaataacgcgcgcacgaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  16990290 ttgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttccctggtagaaacaaaataacgcgcacacgaca 16990191  T
Q  201 tgctgtaattgggcagttttca 222  Q
    || |||||||||||||||||||    
T  16990190 tgatgtaattgggcagttttca 16990169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 31358387 - 31358432
Alignment:
Q  177 aaacaaaataacgcgcgcacgacatgctgtaattgggcagttttca 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  31358387 aaacaaaataacgcgcgcacgacatgatgtaattgggcagttttca 31358432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 16995127 - 16995172
Alignment:
Q  177 aaacaaaataacgcgcgcacgacatgctgtaattgggcagttttca 222  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  16995127 aaacaaaataacgtgcgcacgacatgatgtaattgggcagttttca 16995172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 467355 - 467577
Alignment:
Q  1 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaa-acaatagaggtacctgagatttgagacaatcgaaaaagtaaataagggca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  467355 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggca 467454  T
Q  100 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttcccaggtagaaacaaaataacgcgcgcacgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  467455 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacgatgaataacttccctggtagaaacaaaataacgcacgcacgac 467554  T
Q  200 atgctgtaattgggcagttttca 222  Q
    ||| |||||||||||||||||||    
T  467555 atgatgtaattgggcagttttca 467577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 462074 - 462029
Alignment:
Q  177 aaacaaaataacgcgcgcacgacatgctgtaattgggcagttttca 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  462074 aaacaaaataacgcgcgcacgacatgatgtaattgggcagttttca 462029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35895565 - 35895343
Alignment:
Q  1 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaa-caatagaggtacctgagatttgagacaatcgaaaaagtaaataagggca 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35895565 taaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggca 35895466  T
Q  100 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacaatgaataacttcccaggtagaaacaaaataacgcgcgcacgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  35895465 attgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaacgatgaataacttccctggtagaaacaaaataacgcgcgcacgac 35895366  T
Q  200 atgctgtaattgggcagttttca 222  Q
    ||| ||||||||| |||||||||    
T  35895365 atgatgtaattggacagttttca 35895343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 35900846 - 35900891
Alignment:
Q  177 aaacaaaataacgcgcgcacgacatgctgtaattgggcagttttca 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  35900846 aaacaaaataacgcgcgcacgacatgatgtaattgggcagttttca 35900891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 20274168 - 20274017
Alignment:
Q  2 aaaagtaatggatcagcatatgaaattagttatgaccaatggagaaaaa-caatagaggtacctgagatttgagacaatcgaaaaagtaaataagggcaa 100  Q
    ||||| ||||||||| |||||||||||||| ||||| | |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20274168 aaaagaaatggatcaacatatgaaattagtgatgacaattggagaaaaaacaatagacgtacctgagatttgagacaatcgaaaaagtaaataagggcaa 20274069  T
Q  101 ttgaatattagtgttctttgtgttttggcacaagctagttagtttttgcagcaa 154  Q
     |||||||||||||||| ||| ||||||  ||||||||||||||||||||||||    
T  20274068 ctgaatattagtgttctctgtattttgg--caagctagttagtttttgcagcaa 20274017  T

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