View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_19 (Length: 298)
Name: NF3934_low_19
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_19 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 1404143 - 1403878
Alignment:
| Q |
11 |
catcatcattcaagcatgatgacaaaaacattatgtgaaccaaacaagagatcaatcaaatagtaaaatacaaatgaaaaggaatctttttcttgttggt |
110 |
Q |
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| T |
1404143 |
catcatcattcaagcatgatgacaaaaacattatgtgaaccaaacaagagatcaatcaaatagtaaaatacaaatgaaaaggaatctttttcttgttggt |
1404044 |
T |
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| Q |
111 |
ggtttcaatccgaagccatacctttcacccttcacccttttctgcaagtttatcttccattcttagttcttctattcttagttcttttgttatgcctttt |
210 |
Q |
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| T |
1404043 |
ggtttcaatccgaagccatacctttcac-------ccttttctgcaagtttatcttcc---------------attcttagttcttttgttatgcctttt |
1403966 |
T |
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| Q |
211 |
aaaagtaaacttgcagccacaatcaattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggc |
298 |
Q |
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| T |
1403965 |
aaaagtaaacttgcagccacaatcaattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggc |
1403878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 1400439 - 1400161
Alignment:
| Q |
11 |
catcatcattcaagcatgatgacaaaaacattatgtgaaccaaacaagagatcaatcaaatagtaaaatacaaatgaaaaggaatctttttcttgttggt |
110 |
Q |
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| T |
1400439 |
catcatcattcaagcatgatgacaaaaacattatgtgaaccaaacaagagatcaatcatatagt-aaatacaaatgaaaaggaatccttttcttgtttgt |
1400341 |
T |
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| Q |
111 |
ggtttcaatccgaagccatacctttcacccttcacccttttctgcaagtttatcttccattcttagttcttcta---ttcttagttcttttgttatgcct |
207 |
Q |
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| T |
1400340 |
ggtttcaatccgaagccatacct-------ttcacccttttctgcaagtttatcttccattcttagctcttctattcttcttggttcttttccctttcct |
1400248 |
T |
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| Q |
208 |
tttaaaagtaaacttgcagccacaatcaattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgcttt |
294 |
Q |
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| T |
1400247 |
tataaaagtaaacttgcagccacagtcaattgaaagttgacatgttacagaagcccttggacatgagaataatactctttctgcttt |
1400161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 410690 - 410624
Alignment:
| Q |
230 |
caatcaattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttag |
296 |
Q |
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| T |
410690 |
caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttag |
410624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 955016 - 955088
Alignment:
| Q |
69 |
aatagtaaaatacaaatgaaaaggaatctttttcttgttggtggtttcaatccgaagccatacctttcaccctt |
142 |
Q |
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| T |
955016 |
aatagtaacatacaaatgaaaaggaatccctttctt-tttgtgacttcaatccaaagccatccctttcaccctt |
955088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 45809722 - 45809814
Alignment:
| Q |
47 |
gaaccaaacaagagatcaatcaaatagtaaaatacaaatgaaaaggaatctttttcttgttggtggtttcaatccgaagccatacctttcaccc |
140 |
Q |
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| T |
45809722 |
gaaccaaaccagagatcaatcaaataattaaatacagatgaaaaggagtctctttcttgtt-gtggtttcaatccaaagccatgtctttcaccc |
45809814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 48675101 - 48675149
Alignment:
| Q |
241 |
aagttgacatgttgcagatgcctttggacatgaggataatactctttct |
289 |
Q |
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| T |
48675101 |
aagttgacatgttgcagaggcccttggacatgaggataattccctttct |
48675149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 10116388 - 10116442
Alignment:
| Q |
235 |
aattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttct |
289 |
Q |
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| T |
10116388 |
aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttct |
10116442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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