View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_21 (Length: 288)
Name: NF3934_low_21
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 30406942 - 30407208
Alignment:
| Q |
1 |
cccacctaccaaaataaaggtactcgaccccccgctaggccatatctagcagccaagagtctaaaccaaagaccctttgtctgccacctacctccaatac |
100 |
Q |
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| T |
30406942 |
cccacctaccaaaataaaggtactcgatcccccactaggccatatctagcagccaagagtctaaaccaaagacccttcgtctgccacctacctccaatac |
30407041 |
T |
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| Q |
101 |
catttatccaaccatattaaactccctcattctccttgcccctaaaccgtcaatctccttgtccaaacagatatgactttaactacatcacataaacaac |
200 |
Q |
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| T |
30407042 |
catttatccaaccatattaaactccctcattctccttgcccctaaaccgccaatctccttatccaaacagatatgactttaactacatcacataaacaac |
30407141 |
T |
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| Q |
201 |
ctccttcaacttaatgttggaattattttagagaaaatacaaacaagtgtcctctaggcattgttta |
267 |
Q |
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| T |
30407142 |
ctccttcaacttaatgttggaattattttaaagaaaatacaaacaagtgtcctctaggcattgttta |
30407208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 30403149 - 30403197
Alignment:
| Q |
182 |
actacatcacataaacaacctccttcaacttaatgttggaattatttta |
230 |
Q |
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| T |
30403149 |
actacataatataaacaacctcctccaacttaatattggaattatttta |
30403197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 25132768 - 25132828
Alignment:
| Q |
112 |
ccatattaaactccctcattctccttgcccctaaaccgtcaatctccttgtccaaacagat |
172 |
Q |
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| T |
25132768 |
ccatattaaactctctaattctccttagccccaaaccaccaacctccttgtccaaacagat |
25132828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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