View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_23 (Length: 282)
Name: NF3934_low_23
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 5980788 - 5981069
Alignment:
| Q |
1 |
gaagaaaaatatatattttgatttatcctagtttgtaataatatgaattatcatttcctaaacttaaacctaatgcacctctataaataaagggtttgga |
100 |
Q |
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| T |
5980788 |
gaagaaaaatatatattttgatttatcctagtttgtaataatatgaattatcatctcctaaacttaaacctaatgcacctctataaataaagggtttgga |
5980887 |
T |
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| Q |
101 |
aaagtggtagaggggagacaaaacaagagaaaaggagtcgagaaaacttacgaaataggtacgacttcttctccaaatatttcaatgaattagacttttt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5980888 |
aaagtggtagaggggagaaaaaacaagagaaaaggagtcgagaaaacttacgaaataggtacgacttcttctccaaatatttcaatgaattagacttttt |
5980987 |
T |
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| Q |
201 |
gccttgatgcatttgtgtgctccttttgttgttcttgcataaattttgtctgctcctttttatgtgtgctgttttagagtat |
282 |
Q |
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| T |
5980988 |
gccttgatgcatttgtgtgctccttttgttgttcttgcataaattttgtctgctcctttttatgtgtgctattttagagtat |
5981069 |
T |
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