View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3934_low_27 (Length: 264)
Name: NF3934_low_27
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 4239517 - 4239746
Alignment:
| Q |
18 |
gtttggtctcattattggagttgtggcaacagtagcagcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4239517 |
gtttggtctcattattggagttgtggcaacagtagcag---ttgtgttgatca---ttttattcatcaacctcatctttgaagatatccatttctcagac |
4239610 |
T |
|
| Q |
118 |
ccgtgactgttctttttgctgctatcttccagctccaaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4239611 |
ccgtgactgttctttttgctgctatcttccagctccaaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatg |
4239710 |
T |
|
| Q |
218 |
aattatagagttgttgttgatgattgcttgatgatg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4239711 |
aattatagagttgttgttgatgattgcttgatgatg |
4239746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19921686 - 19921810
Alignment:
| Q |
18 |
gtttggtctcattattggagttgtggcaacagtagcagcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagac |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
19921686 |
gtttagtctcattattggagttgtggtaacaatagcag---ttgtgttgatca---ttttattcattaacctcatctttgaagacatccatttctcagac |
19921779 |
T |
|
| Q |
118 |
ccgtgactgttctttttgctgctatcttcca |
148 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |
|
|
| T |
19921780 |
ccgtaactattctttttgctgctatcttcca |
19921810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19938545 - 19938669
Alignment:
| Q |
18 |
gtttggtctcattattggagttgtggcaacagtagcagcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagac |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19938545 |
gtttggtctcattattggagttgtggtaactgt---agaagttgtgt---tcatcattttattcatcaacctcatctttgaagatatccatttctcagac |
19938638 |
T |
|
| Q |
118 |
ccgtgactgttctttttgctgctatcttcca |
148 |
Q |
| |
|
|||||||| |||||||| ||||||| |||| |
|
|
| T |
19938639 |
ccgtgactattctttttattgctatcatcca |
19938669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 19938667 - 19938720
Alignment:
| Q |
197 |
ccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg |
253 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
19938667 |
ccataactgactcacatgatgaattataga---gttgttggtgattgcttgatgatg |
19938720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University