View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_33 (Length: 247)
Name: NF3934_low_33
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2671774 - 2671533
Alignment:
| Q |
1 |
ccatgttcctttcatctgaatattctctgctatttgaaaacttcgaatcagataaccgtgttttctgacctctatcagaattacctggtttagagaaaaa |
100 |
Q |
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| T |
2671774 |
ccatgttcctttcatctgaatattctctgctatttgaaaacttcgaatcagataaccgtgttttctgacctctatcagaattacctggtttagagaaaaa |
2671675 |
T |
|
| Q |
101 |
aggaagnnnnnnnnnn--cagtatatgaagctgcaaaaagaatcacctaatgtagtgaagaaagaaaacataggtagcatggttaagagaacattaggtg |
198 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2671674 |
aggaaagaaaaaaaaaaacagtatatgaagctgcaacaagaatcacctaatgtagtgaagaaagaaaacataggtagcatggttaagagaacattaggtg |
2671575 |
T |
|
| Q |
199 |
caagtacctctctgactattattcactttctgtattctctgc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2671574 |
caagtacctctctgactattattcactttctgtattctctgc |
2671533 |
T |
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