View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_4 (Length: 759)
Name: NF3934_low_4
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 367 - 744
Target Start/End: Original strand, 10048642 - 10049022
Alignment:
| Q |
367 |
gagggtcaaattctcacgataattcttttttatgaagaattattataacatttggttaataagcaaatatgttggtatatcaataatcgtattagagcta |
466 |
Q |
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| T |
10048642 |
gagggtcaaattctcacgataattcttttttatgaagaattattataacatttggttaataagcaaatatgttggtatatcaataatcgtattggagcta |
10048741 |
T |
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| Q |
467 |
gctaaaaatgtagttattcatgtcattgcatgaattacctcatttgttagtctccgactaaactcaacacgaatttcattaccctctttgtttttcctg- |
565 |
Q |
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| T |
10048742 |
gctaaaaatgtagttattcatgtcattgcatgaattacctcatttgttagtctgcgactaaactcaacacaaattttattaccctctttatttttcctgc |
10048841 |
T |
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| Q |
566 |
-gagcttgactcatcttcctctttcttatgat---cacctctactatgcactatatatattttctattgtctttctttttgaccaaaaattaaaataaat |
661 |
Q |
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| T |
10048842 |
agagcttgactcatcttcctctttcttattattaccacctctactatgcac--tatatattttctattgtctctctttttgaccaaaaattaaaataaat |
10048939 |
T |
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| Q |
662 |
ttaatagcaaaattaacaagaggacaaagttaggtctctaatcactacatataaaaataaacactcaattcttaaatatattt |
744 |
Q |
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| T |
10048940 |
ttaatagcaaaattaacaagaggaaaaagttaggtatctaatcactacatataaaattaaacactcaattcttaaatatattt |
10049022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 10047227 - 10047438
Alignment:
| Q |
16 |
atggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatgaggtcgt |
115 |
Q |
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| T |
10047227 |
atggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatgaggtcat |
10047326 |
T |
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| Q |
116 |
tggcgaagatgaaatggaagagtaagctttatatagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttggtc |
215 |
Q |
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| T |
10047327 |
tggcgatgatgaaatggaagagtaagctttatatagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttatcagttgttttggtc |
10047426 |
T |
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| Q |
216 |
cacaaaatggct |
227 |
Q |
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| T |
10047427 |
cacaaaatggct |
10047438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 38709190 - 38709321
Alignment:
| Q |
16 |
atggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatgaggtcgt |
115 |
Q |
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| T |
38709190 |
atggagagattgttaatgctgaaactggggtgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatggatatgaggtcat |
38709289 |
T |
|
| Q |
116 |
tggcgaagatgaaatggaagagtaagctttat |
147 |
Q |
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| T |
38709290 |
tggtgatgatgaaacggaagattaagctttat |
38709321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 10048504 - 10048571
Alignment:
| Q |
232 |
atgaattgttcatgaaccttaggtttttagcaagctaattctcatcattttggagggagtagttcatt |
299 |
Q |
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| T |
10048504 |
atgaattgttcatgaaccttaggtttttaacaagctaattctcatcattttggagggagtagttcatt |
10048571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 38709368 - 38709431
Alignment:
| Q |
149 |
tagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttgg |
213 |
Q |
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| T |
38709368 |
tagttcttgaatgcatcgaaattgcaaacatat-tcacaagtatctcttttattagttcttttgg |
38709431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 45468919 - 45468990
Alignment:
| Q |
16 |
atggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaa |
87 |
Q |
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| T |
45468919 |
atggagggattgttaatgctgaaactggggtgaagtctgatatattgattcagataccgaatggacctaaaa |
45468990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 739581 - 739517
Alignment:
| Q |
23 |
gattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaa |
87 |
Q |
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| T |
739581 |
gattgttaatgctgaaatcggggtgaagtcggatattttgattcagataacaaatggaccaaaaa |
739517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 5959839 - 5959771
Alignment:
| Q |
147 |
tatagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttggtcc |
216 |
Q |
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| T |
5959839 |
tatagtcctagaatgtatcgaaattgcaaatacatc-cacaaatgtctcttttatcagttattttggtcc |
5959771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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