View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_5 (Length: 748)
Name: NF3934_low_5
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 4403394 - 4403032
Alignment:
| Q |
15 |
tcattcaaatcgccatgtaaaaaggcgttattagcatctagctgctctaaaaaccaacctttcgcagctgccaatgccaagagaactctaacagtagtga |
114 |
Q |
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| T |
4403394 |
tcattcaaatcgccatgtaaaaaggtgttattgacatctaaatgctctaaaaaccaaccttttgcagctgccaatgccaagagaactctaacagtagtga |
4403295 |
T |
|
| Q |
115 |
gtttagcaacagggctaaatgtctcaaaatagtccacccattctaatttagtaaatcctttggcaacaagtcgtgccttgtaacgttcaatagtgccatt |
214 |
Q |
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| T |
4403294 |
gttgaccaaccggactaaaggtctcaaaatagtccatccggtctaattgagtaaatcctttggcaacaagtcgtgtcttttaacgttcaatagtgccatc |
4403195 |
T |
|
| Q |
215 |
aacatgatgtttgattttgtaaacccaacgacaaccaataggagttttacctgtaggaagatcaacaatggaccatgtattgttcaaagcaagggaatca |
314 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4403194 |
aacatgatgtttgattttctaaacccaacgacaaccaatagaagttttacttgtaggaagatccacaatggaccatgtattgttcaaagcaagtgaatca |
4403095 |
T |
|
| Q |
315 |
agttcagttttcacagccttttgccaacactcatgtttagaggcttgaaggaaaattttaggt |
377 |
Q |
| |
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| T |
4403094 |
agttcagttttcatagccttttgccaacactcatgtttagaggcttgaagaaaacttttaggt |
4403032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 60 - 381
Target Start/End: Complemental strand, 38824646 - 38824325
Alignment:
| Q |
60 |
tctaaaaaccaacctttcgcagctgccaatgccaagagaactctaacagtagtgagtttagcaacagggctaaatgtctcaaaatagtccacccattcta |
159 |
Q |
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| T |
38824646 |
tctaaaaaccatcctttggcagcagctaaggcaagtaaaactctaacagtggttaatttcgccacagggctaaaagtttcaaagtaatccaccccctcca |
38824547 |
T |
|
| Q |
160 |
atttagtaaatcctttggcaacaagtcgtgccttgtaacgttcaatagtgccattaacatgatgtttgattttgtaaacccaacgacaaccaataggagt |
259 |
Q |
| |
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|| || || ||||| |||||||| || || ||||| || ||||| ||||||| | |||| | ||| || | || ||||||||||| |||||||| || |
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| T |
38824546 |
tttgtgtgaagcctttagcaacaaggcgagctttgtagcgctcaatggtgccatcagcatggtatttaatcctatatacccaacgacatccaataggggt |
38824447 |
T |
|
| Q |
260 |
tttacctgtaggaagatcaacaatggaccatgtattgttcaaagcaagggaatcaagttcagttttcacagccttttgccaacactcatgtttagaggct |
359 |
Q |
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|||||||| ||||||||||||||| | ||| || ||||| || | ||| | |||||| || | ||||| ||| || |||||||| |||||||| |||||| |
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| T |
38824446 |
tttacctgcaggaagatcaacaatagtccaggttttgtttaatgaaagagcatcaagctccgctttcatagcattctgccaacattcatgttttgaggct |
38824347 |
T |
|
| Q |
360 |
tgaaggaaaattttaggttcaa |
381 |
Q |
| |
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|||| ||| |||| ||||||| |
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| T |
38824346 |
tgaataaaagttttgggttcaa |
38824325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 60 - 381
Target Start/End: Original strand, 17882678 - 17882999
Alignment:
| Q |
60 |
tctaaaaaccaacctttcgcagctgccaatgccaagagaactctaacagtagtgagtttagcaacagggctaaatgtctcaaaatagtccacccattcta |
159 |
Q |
| |
|
||||||||||| ||||| ||||| || || || | | |||||||||||| || | ||| || ||||||||||| || ||||| || ||||||| || | |
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| T |
17882678 |
tctaaaaaccatcctttggcagcagctaaggcaagtaaaactctaacagtggttaatttcgccacagggctaaaagtttcaaagtaatccaccccctcca |
17882777 |
T |
|
| Q |
160 |
atttagtaaatcctttggcaacaagtcgtgccttgtaacgttcaatagtgccattaacatgatgtttgattttgtaaacccaacgacaaccaataggagt |
259 |
Q |
| |
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|| ||| || ||||| |||||||| || || ||||| || ||||| ||||||| | |||| | ||| || | || ||||||||||| |||||||| || |
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| T |
17882778 |
tttgagtgaagcctttagcaacaaggcgagctttgtagcgctcaatggtgccatcagcatggtatttaatcctatatacccaacgacatccaataggggt |
17882877 |
T |
|
| Q |
260 |
tttacctgtaggaagatcaacaatggaccatgtattgttcaaagcaagggaatcaagttcagttttcacagccttttgccaacactcatgtttagaggct |
359 |
Q |
| |
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|||||||| ||||||||||||||| | ||| || ||||| || | ||| | |||||| || | ||||| ||| || |||||||| |||||||| |||||| |
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| T |
17882878 |
tttacctgcaggaagatcaacaatagtccaggttttgtttaatgaaagagcatcaagctccgctttcatagcattctgccaacattcatgttttgaggct |
17882977 |
T |
|
| Q |
360 |
tgaaggaaaattttaggttcaa |
381 |
Q |
| |
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|||| ||| |||| ||||||| |
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| T |
17882978 |
tgaataaaagttttgggttcaa |
17882999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 361
Target Start/End: Complemental strand, 6097355 - 6097015
Alignment:
| Q |
21 |
aaatcgccatgtaaaaaggcgttattagcatctagctgctctaaaaaccaacctttcgcagctgccaatgccaagagaactctaacagtagtgagtttag |
120 |
Q |
| |
|
||||| || |||||||||||||| || ||||||| || || ||||||||| |||| || || || | ||| ||||||||||| || ||||| | ||||| |
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| T |
6097355 |
aaatccccgtgtaaaaaggcgttgttcacatctagttgttccaaaaaccaatctttggctgcagcaagtgctaagagaactcttaccgtagtcaatttag |
6097256 |
T |
|
| Q |
121 |
caacagggctaaatgtctcaaaatagtccacccattctaatttagtaaatcctttggcaacaagtcgtgccttgtaacgttcaatagtgccattaacatg |
220 |
Q |
| |
|
|||||||| | || || |||||||| || || | ||| | | || | || |||||||||||| ||||||| | |||||| | |||| | | || |
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| T |
6097255 |
caacagggttgaaagtttcaaaataatcgacaccttcaagctgggtgtagcccttggcaacaagtttggccttgtgcctttcaatggaaccatcagcgtg |
6097156 |
T |
|
| Q |
221 |
atgtttgattttgtaaacccaacgacaaccaataggagttttacctgtaggaagatcaacaatggaccatgtattgttcaaagcaagggaatcaagttca |
320 |
Q |
| |
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|| ||| ||||| || ||||| ||| ||||| ||||||||||| |||||||||| ||||||||||||||||| ||||| || | || |||||||||| |
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| T |
6097155 |
atatttaattttatagacccacttacagccaatgggagttttaccactaggaagatcgacaatggaccatgtattattcaaggccaaggcatcaagttca |
6097056 |
T |
|
| Q |
321 |
gttttcacagccttttgccaacactcatgtttagaggcttg |
361 |
Q |
| |
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|||| ||| || |||||||| ||||||||||| ||||| |
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| T |
6097055 |
accttcatagctttctgccaacaatcatgtttagaagcttg |
6097015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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