View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_6 (Length: 673)
Name: NF3934_low_6
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 461
Target Start/End: Complemental strand, 42823492 - 42823020
Alignment:
| Q |
15 |
cacagaaggaacaacaattcatgaaaaagaaaatcaatttcatggacaaaagataatgaagaaaaacacccaaattcaaattttacaaagaatcaattca |
114 |
Q |
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| T |
42823492 |
cacagaaggaacaacaattcatcaaaaagaaaatcaatttcatggacaaaagataatgaagaaaaacacccaaattcaaattttacaaagaatcaattca |
42823393 |
T |
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| Q |
115 |
agaaaagatgttagg----------ggaactttcgtctttttgaccaaaatttatgtcattctctcgcttttttc-agttcatctgtgcgcacaaagaat |
203 |
Q |
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| T |
42823392 |
agaaaagatgttaggtaatgttaggggaactttcgtctttttgaccaaaatttgtgtcattctctcacttttttccagttcatttgtgcgcacaaagaat |
42823293 |
T |
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| Q |
204 |
tttttagtgggccccagccaaatctttctttctttcaccatttatatttgttccaaatgatgaaaactggatcttcaatccactttttctcccca----- |
298 |
Q |
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| T |
42823292 |
tttttagtgggccccagccaaatctttctttctttcaccatttatatttgttccaaatgatgaaaactggatcttcaatccactttttctccccagcatt |
42823193 |
T |
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| Q |
299 |
----------tcattcttcaaaataaaacatagtgttccactaaaatgtgcggatgtaccctcttgtaatatgagagttatgnnnnnnnncccactaaaa |
388 |
Q |
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| T |
42823192 |
ctttcctccttcattcttcaaaataaaacatagtgttccactaaaatgtgcggatgtaccctcttgtaatatgagagttatgttttttttcccagtaaaa |
42823093 |
T |
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| Q |
389 |
tgagagttatgttaaatctgtcttcctttaaaataaatatcaagaaggatcaagatcatctgaaatataaact |
461 |
Q |
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| T |
42823092 |
tgagagttatgttaaatctgtcttcctttaaaataaatatcaagaaggatcaagatcatctgaaatataaact |
42823020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 502 - 673
Target Start/End: Complemental strand, 42822940 - 42822769
Alignment:
| Q |
502 |
tatattgttgtatataaagaaaaaagtccatttcgactcttttggattggcttttaaagaaaccggtggtgggtcatgtgaaaagcaatattaacgcttc |
601 |
Q |
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| T |
42822940 |
tatattgttgtatataaagaaaatagtccatttcgactcttttggattggcttttaaagaaaccggtggtgggtcgtgtgaaaagcaatattaacgcttc |
42822841 |
T |
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| Q |
602 |
cttttattccttaacaaagtaggtgtttgcatatgtatcagagcataattttagttaaggtatgcacatttt |
673 |
Q |
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| T |
42822840 |
ctttttttccttaacaaagtaggtgtttgcatatgtatcagagcatacttttagttaaggtatgcacatttt |
42822769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 496 - 673
Target Start/End: Complemental strand, 33072712 - 33072535
Alignment:
| Q |
496 |
cttatatatattgttgtatataaagaaaaaagtccatttcgactcttttggattggcttttaaagaaaccggtggtgggtcatgtgaaaagcaatattaa |
595 |
Q |
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| T |
33072712 |
cttatctatattgttgtatataaagaaaatagtccatttcaactcttttggattggcttttaaaaaaaccggcggtgggtcgtgtgaaaagcaatattaa |
33072613 |
T |
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| Q |
596 |
cgcttccttttattccttaacaaagtaggtgtttgcatatgtatcagagcataattttagttaaggtatgcacatttt |
673 |
Q |
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| T |
33072612 |
cgcttccttttattcattaacaaagtaggtgtttgcatatgtatcagagcatacttttagttaaggtatgcacatttt |
33072535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 232 - 409
Target Start/End: Complemental strand, 33073030 - 33072837
Alignment:
| Q |
232 |
tttctttcaccatttatatttgttccaaatgatgaaaactggatcttcaatccactttttctcccca---------------tcattcttcaaaataaaa |
316 |
Q |
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| T |
33073030 |
tttctttcaccatttatatttgttccaaatgatgaaaactggatcttcaatccactttttctccccaacattccttcctccttcattcttcaaaataaaa |
33072931 |
T |
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| Q |
317 |
catagtgttccactaaaatgtgcggatgtaccctcttgtaatatgagagttatg-nnnnnnnncccactaaaatgagagttatgttaaatctgt |
409 |
Q |
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| T |
33072930 |
tatagtgttccactaaaatgtgcggatgtaccctcttgtaatatgagagttatgtttttttttcccactaaaatgagagttatgttaaatctgt |
33072837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 33073111 - 33073028
Alignment:
| Q |
122 |
atgttaggggaactttcgtctttttgaccaaaatttatgtcattctctcgcttttttcagttcatctgtgcgcacaaagaattt |
205 |
Q |
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| T |
33073111 |
atgttaggggaactttcttctttttgaccaaaatttgtgtcattatctcgcttttttcagttcatttgtgcgcacaaagaattt |
33073028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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