View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_8 (Length: 612)
Name: NF3934_low_8
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_8 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 14 - 612
Target Start/End: Complemental strand, 2672356 - 2671759
Alignment:
| Q |
14 |
agaataatatatatcaataatttgagtatatcacaataagctagagactttgcaaaatgaacattaataatcttgacaatgcttgatataaactcaccaa |
113 |
Q |
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| T |
2672356 |
agaataatatatatcaataatttgagtatatcacaatacgctagagactttgcaaa-tgaacattaataatcttgacaatgcttgatataaactcaccaa |
2672258 |
T |
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| Q |
114 |
ataaaatagaatctaggctgttattttcacagtattcataaatcaacatcttctcctctttctcaatgcagcaaccaaagagccgtacaagatttcgatg |
213 |
Q |
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| T |
2672257 |
ataaaatagaatctaggctgttattttcacagtattcataaatcaacatcttctcctctttctcaatgcagcaaccaaagagccgtacaagatttcgatg |
2672158 |
T |
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| Q |
214 |
ttgaagcttcgcaattgatcttacttcattcttaaattctacatttccttgtccagagcttgttgacaacctcttcacagcaatgtcttggccatccact |
313 |
Q |
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| T |
2672157 |
ttgaagcttcgcaattgatcttacctcattcttgaattctacatttccttgtccagagcttgttgacaacctcttcacagcaatgtcttggccatccact |
2672058 |
T |
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| Q |
314 |
aacctaccctgttcaccgacacatggtttcattcaattatttctgccgttttaaattattactaatgtctacatgtcaatatcgtgtctcatgttcatgt |
413 |
Q |
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| T |
2672057 |
aacctaccctgttcaccaacacatggtttcattcaattatttttgccgttttaaattattactaatgtctacgtgtcaatatcgtgtctcgtgttcatgt |
2671958 |
T |
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| Q |
414 |
ttgtgtcggtgtttcacggaattcaatcaacttataactgtactaatgtatatataaataatggaaatttatttaccctgtaaacagctccaaagcctcc |
513 |
Q |
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| T |
2671957 |
ttgtgtcggtgtttcacagaattcaatcaacttataactgtactaatgtatatataaataatggaaatttatttaccctgtaaacagctccaaagcctcc |
2671858 |
T |
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| Q |
514 |
ttctccaagtttattagctaaagagaaggagtttgtagcatctgatatgacatggaattcaaaaagtggcaaatcaaggtcatccatgttcctttcatc |
612 |
Q |
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| T |
2671857 |
ttctccaagtttattagctaaagagaaggagtttgtagcatctgatatgacatggaattcaaacagtggcaaatcaaggtcatccatgttcctttcatc |
2671759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 2682389 - 2682513
Alignment:
| Q |
182 |
cagcaaccaaagagccgtacaagatttcgatgttgaagcttcgcaattgatcttacttcattcttaaattctacatttccttgtccagagcttgttgaca |
281 |
Q |
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| T |
2682389 |
cagcaacctaatagccgaacaagatttctatgttgaagcttggcaattaacttgacctcattcttaaattcttcaactccttgctctgaggtttgtgaca |
2682488 |
T |
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| Q |
282 |
acctcttcacagcaatgtcttggcc |
306 |
Q |
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| T |
2682489 |
acctcttgacagcaatttcttggcc |
2682513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 34328637 - 34328530
Alignment:
| Q |
145 |
gtattcataaatcaacatcttctcctctttctcaatgcagcaaccaaagagccgtacaagatttcgatgttgaagcttcgcaattgatcttacttcattc |
244 |
Q |
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| T |
34328637 |
gtattcataaaccagcattttctcctctccttcaaggcaacaaccaagaagctttacaagatttcggtgttgaagtttcgcaatcaattttacttcgttt |
34328538 |
T |
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| Q |
245 |
ttaaattc |
252 |
Q |
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| T |
34328537 |
ttaaattc |
34328530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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