View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3934_low_9 (Length: 561)
Name: NF3934_low_9
Description: NF3934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3934_low_9 |
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| [»] scaffold0155 (3 HSPs) |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: scaffold0155 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 37396 - 37601
Alignment:
| Q |
4 |
atttattttttctctaataatttgttcattagtttgatgggagatgaacattattttactcctttattttgtcattcatttccttcaacaacatttgaga |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37396 |
atttattttttctctaataatttgttcattagtttgatgggagatgaacattattttactcctttattttgtcattcatttccttcaacaacatttgaga |
37495 |
T |
|
| Q |
104 |
ctgagaagaggaagacagttaccataacaaaatcgggcaccaactttaatgttcattgagatttttnnnnnnngaaataatgaatgttaaacaaatatcc |
203 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
37496 |
cagagaaggggaagacagttaccataacaaaatcgggcaccaactttaatgttcattgagattttttaaaaaagaaataaagaatgtgaaacaaatatcc |
37595 |
T |
|
| Q |
204 |
tatacc |
209 |
Q |
| |
|
|||||| |
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| T |
37596 |
tatacc |
37601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 388
Target Start/End: Original strand, 37666 - 37780
Alignment:
| Q |
273 |
acagtaacttgataaatataatttcggtattttgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaattcctcata |
372 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37666 |
acagtaacttgataaatgtaatttcggtattttgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaatt-ctcata |
37764 |
T |
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| Q |
373 |
aagtgtatcgttggat |
388 |
Q |
| |
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|||||||||||||||| |
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| T |
37765 |
aagtgtatcgttggat |
37780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 444 - 555
Target Start/End: Original strand, 37836 - 37947
Alignment:
| Q |
444 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccttaggtgttaattttttgttctctt |
543 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
37836 |
gatgtcataatgtttgtttgcattttgatcacactatttgttgacatggataaaaagatgaagatcatgaagaccataagtgttaattttttgttctctt |
37935 |
T |
|
| Q |
544 |
tatattcttcga |
555 |
Q |
| |
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|||||||||||| |
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| T |
37936 |
tatattcttcga |
37947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 444 - 555
Target Start/End: Original strand, 2662596 - 2662707
Alignment:
| Q |
444 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccttaggtgttaattttttgttctctt |
543 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2662596 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccataggtgttaattttttgttctctt |
2662695 |
T |
|
| Q |
544 |
tatattcttcga |
555 |
Q |
| |
|
|||||||||||| |
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| T |
2662696 |
tatattcttcga |
2662707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 277 - 388
Target Start/End: Original strand, 2662428 - 2662540
Alignment:
| Q |
277 |
taacttgataaatataatttcggtattttgaaaactttttagtccaa-ttctataaattttcttgagagagggtgtgccaactgtcaattcctcataaag |
375 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2662428 |
taacttgataaatgtaatttcggtattttgaaaactttttagtccaaattctataaattttcttgagatagggtgtgccaactgtcaattcctcataaag |
2662527 |
T |
|
| Q |
376 |
tgtatcgttggat |
388 |
Q |
| |
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||||||||||||| |
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| T |
2662528 |
tgtatcgttggat |
2662540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 2662213 - 2662307
Alignment:
| Q |
4 |
atttattttttctctaataatttgttcattagtttgatgggagatgaacattattttactcctttattttgtcattcatttccttcaacaacatt |
98 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662213 |
atttattttttctctaataatttgttcattagtttgatgggagatgaacattattttactcctttattttgtcattcatttccttcaacaacatt |
2662307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 2662339 - 2662371
Alignment:
| Q |
177 |
gaaataatgaatgttaaacaaatatcctatacc |
209 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
2662339 |
gaaataatgaatgtgaaacaaatatcctatacc |
2662371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 22361954 - 22361744
Alignment:
| Q |
4 |
atttattttttctctaataatttgttcattagtttgat--gggagatgaacattattttactcctttatt--ttgtcattcatttccttcaacaacattt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| || ||||||||| ||||||||||||| |
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| T |
22361954 |
atttattttttctctaataatttgttcattagtttgatatgggagatgaacattttttt-ctcctttattggttttcattcattaaattcaacaacattt |
22361856 |
T |
|
| Q |
100 |
gagactgagaagaggaagacagttaccataacaaaatcgggcaccaactttaatgttcattgaga-tttttnnnnnnngaaata-atgaatgttaaacaa |
197 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||| | ||||| |||||| |||||||| |||||| |
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| T |
22361855 |
gagatagagaagaggaagacagttaccataaaaaaatggggcaccaattttcatgttcattgaaatttttttaaaaaagaaatacatgaatgtgaaacaa |
22361756 |
T |
|
| Q |
198 |
atatcctatacc |
209 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22361755 |
atatcctatacc |
22361744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 22361679 - 22361561
Alignment:
| Q |
273 |
acagtaacttgataaatataatttcggtattttgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaattcctcata |
372 |
Q |
| |
|
||||||||||||||||| ||||| | |||||| |||||||||||| |||||||||||| | ||||||| | |||||||| |||||||||| |||| ||| |
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|
| T |
22361679 |
acagtaacttgataaatgtaattccagtatttggaaaactttttactccaattctatataagttcttgacatagggtgtgtcaactgtcaagtccttata |
22361580 |
T |
|
| Q |
373 |
aagtgtatcgttggatgta |
391 |
Q |
| |
|
|||||| ||| |||||||| |
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|
| T |
22361579 |
aagtgtgtcgctggatgta |
22361561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 34558 - 34629
Alignment:
| Q |
20 |
ataatttgttcattagtttg--atgggagatgaacattattttactcctttattttgtcattcatttccttca |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||| ||||||||||||| |
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| T |
34558 |
ataatttgttcattagtttgatatgggagatgaacatt-tttttctcctttgttttgtctttcatttccttca |
34629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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