View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_high_14 (Length: 250)
Name: NF3935_high_14
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 44 - 240
Target Start/End: Original strand, 243619 - 243819
Alignment:
| Q |
44 |
aaatctgattatcatgacaaaata---acaaaatgttaggtatattgtaatcatataannnnnnnnn-aagaatacgtgataatttaatattttgttaca |
139 |
Q |
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| T |
243619 |
aaatctgattatcatgacaaaatattaacaaaatgttaggtatattgtaatcatataatttttattttaagaatacgtgataatttaatattttgttaca |
243718 |
T |
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| Q |
140 |
ggttatggcacaaccattttttcgcgtcgttgaaatgggtgctaatatcgcgtggcccgattcaaatttcataaatcaagactatttatttaacgtctgt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
243719 |
ggttatggcacaaccattttttcgcgtcgttgaaatgggtgctaatatcgcgtggcccgattcaaatttcataaatcaagactatttatttaacgtgtgt |
243818 |
T |
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| Q |
240 |
g |
240 |
Q |
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| |
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| T |
243819 |
g |
243819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 221551 - 221383
Alignment:
| Q |
67 |
aacaaaatgttaggtatattgtaatcatataannnnnnnnnaagaatacgtgataatttaatattttgttacaggttatggcacaaccattttttcgcgt |
166 |
Q |
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|||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
221551 |
aacaaaatgttatgtatattgtaattgtataatattttgttaagaatacgtgataatttaatattttatttcaggtcatggcacaaccattttttcgcgt |
221452 |
T |
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| Q |
167 |
cgttgaaatgggtgctaatatcgcgtggcccgattcaaatttcataaatcaagactatttatttaacgt |
235 |
Q |
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| T |
221451 |
cgttgaaatgggtgctaatatcgcatggcccgattcaaaattcataaaccaagactattcatttaacgt |
221383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 243579 - 243608
Alignment:
| Q |
1 |
cattatatttttcattttgtaatatcatca |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
243579 |
cattatatttttcattttgtaatatcatca |
243608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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