View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_high_7 (Length: 295)
Name: NF3935_high_7
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 32592698 - 32592436
Alignment:
| Q |
12 |
atcatcaaattgcttgcatggttcttatatataccactataaggttatgcaatattattcatcatccataggttcattggaagttcaaataattagagca |
111 |
Q |
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| T |
32592698 |
atcatcaaattgcttgcatggttcttatatataccactctaaggttatgcaatatt---catcatccataggttcattggaagttcaaataattagagca |
32592602 |
T |
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| Q |
112 |
atgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattgcaagtgttccatcatcttcagctgctcctttattaggaaacaaca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32592601 |
atgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattgcatgtgttccatcatcttcagctgctcctttattaggaaacaaca |
32592502 |
T |
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| Q |
212 |
atgtaaccaaagttgagagttatatgttgcaaaatggacttggtcagacaccccccatggggtatg |
277 |
Q |
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| T |
32592501 |
atgtaaccaaagttgagagttatatgttgcaaaatggacttggtcagacacctcccatggggtatg |
32592436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 32602856 - 32602578
Alignment:
| Q |
12 |
atcatcaaattgcttgcatggtt---cttatatataccactataaggttatgcaatattattcatc-------atccataggttcattggaagttcaaat |
101 |
Q |
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| T |
32602856 |
atcatcaaattgcttgcatggttggtcttatatataccactataaagttatgcaatattcatcatccttcattattcataggttcattggaagttcaaat |
32602757 |
T |
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| Q |
102 |
aattagagcaatgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattgcaagtgttccatcatcttcagctgctcctttatta |
201 |
Q |
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| T |
32602756 |
aattagagcaatggctagattgatggtgcttgcattttgtatcctcatgttgctgaatattattgcaagtgttccatcatcttcagctgctcgattatta |
32602657 |
T |
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| Q |
202 |
ggaaaca---acaatgtaaccaaagttgagagttatatgttgcaaaatggacttggtcagacaccccccatggggtatg |
277 |
Q |
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||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32602656 |
ggaaacaacaacaatgtaaccaaaattaagagttatatgttgcaaaatggacttggtcagacacctcccatggggtatg |
32602578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 35125273 - 35125149
Alignment:
| Q |
83 |
gttcattggaagttcaaataattagagcaatgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattgcaagtgttccatcatc |
182 |
Q |
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| T |
35125273 |
gttcattggaagtgcaaataattagagcaatggctagggtgatggtgcttgtgttttacatcctagtgctagtgaa---tattgcaagtgttccatcatc |
35125177 |
T |
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| Q |
183 |
ttcagctgctcctttattaggaaacaac |
210 |
Q |
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| T |
35125176 |
ttcagctgctcgtttattaggaaccaac |
35125149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 35125111 - 35125061
Alignment:
| Q |
227 |
agagttatatgttgcaaaatggacttggtcagacaccccccatggggtatg |
277 |
Q |
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|||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
35125111 |
agagttatttgttacaaaatggacttggtcagacacctcccatggggtatg |
35125061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 34581233 - 34581190
Alignment:
| Q |
162 |
tattgcaagtgttccatcatcttcagctgctcctttattaggaa |
205 |
Q |
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| T |
34581233 |
tattgcaagtattccatcatctacagctgctcgtttattaggaa |
34581190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 34581147 - 34581094
Alignment:
| Q |
227 |
agagttatatgttgcaaaatggacttggtcagacaccccccatggggtatgcta |
280 |
Q |
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|||||||||||||||||||||||||||| | || || ||||||||||| |||| |
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| T |
34581147 |
agagttatatgttgcaaaatggacttggacgtactcctcccatggggtaagcta |
34581094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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