View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_high_8 (Length: 285)
Name: NF3935_high_8
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 267
Target Start/End: Complemental strand, 17202844 - 17202718
Alignment:
| Q |
141 |
atctaagttatcaattaaaaacttagttaacttttcaataaaataagaacaattcacaacagggatgaaatcacacataatgaagaatattctttcaagt |
240 |
Q |
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| T |
17202844 |
atctaagttatcaattaaaaagtcagttaaattttcaataaaataagagcaattcacaacagggatgaaatcacacataatgaagaatattcttttaagt |
17202745 |
T |
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| Q |
241 |
atgaggcaacttctggctaggctataa |
267 |
Q |
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| T |
17202744 |
atgaggcagcttctggctaggctataa |
17202718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 17202977 - 17202901
Alignment:
| Q |
4 |
agatggacatcatctctgtttgttcgtttatttacttctataatgatatataaagatgatacactcttttatgttaga |
81 |
Q |
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| T |
17202977 |
agatggacatcatgtctgtttgttcgtttatttacttctataatgatatataaagatgatacact-ttttatgttaga |
17202901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 35390490 - 35390538
Alignment:
| Q |
144 |
taagttatcaattaaaaacttagttaacttttcaataaaataagaacaat |
193 |
Q |
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| T |
35390490 |
taagttatcaattaaaaaattagttaa-gtttcattaaaataagaacaat |
35390538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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