View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_low_11 (Length: 276)
Name: NF3935_low_11
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 15442932 - 15443181
Alignment:
| Q |
11 |
cataggtgagaattggtggtgatgtttgtattccttcacctaatccatctactggatcaattccaagtatggctgaaaattttagatcagttgtgatgtt |
110 |
Q |
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| T |
15442932 |
cataggtgagaattggtggtgatgtttgtattccttcacctaatccatctactggatcaattccaagtatggctgaaaattttagatcaattgtgatgtt |
15443031 |
T |
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| Q |
111 |
taattttcttagagcaatagcaaatgatgtttttccgccgcgactatggcctccaagtgctatcttgttaaattttggtgttatgtttggtggaagaaac |
210 |
Q |
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| T |
15443032 |
taattttcttagagcaatagcaaatgatgtttttccgccgcgactatggcctccaagtgctaacttgttaaaatttggtgttatgtttggtggaagaaac |
15443131 |
T |
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| Q |
211 |
ttgtatagtccttcagatagccagcttgttattgcagctactgagtaaat |
260 |
Q |
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| T |
15443132 |
ttgtttagtccttcagatagccaacttgttattgcagctactgagtaaat |
15443181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 15448821 - 15449070
Alignment:
| Q |
11 |
cataggtgagaattggtggtgatgtttgtattccttcacctaatccatctactggatcaattccaagtatggctgaaaattttagatcagttgtgatgtt |
110 |
Q |
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|||||||||||||||||||||||||||| |||||| | | | |||||| || ||||||| ||| | ||||||||||||||||||||||||||| ||||| |
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| T |
15448821 |
cataggtgagaattggtggtgatgtttgctttcctttatccattccatcgaccggatcaactcctattatggctgaaaattttagatcagttgtcatgtt |
15448920 |
T |
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| Q |
111 |
taattttcttagagcaatagcaaatgatgtttttccgccgcgactatggcctccaagtgctatcttgttaaattttggtgttatgtttggtggaagaaac |
210 |
Q |
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| T |
15448921 |
taattttcttagagcaactgcgaaagatgtttttccgccgcgactatgaccaccaagtgctaacttgtgaaaatttggttttatatttagtggaagaatc |
15449020 |
T |
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| Q |
211 |
ttgtatagtccttcagatagccagcttgttattgcagctactgagtaaat |
260 |
Q |
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| T |
15449021 |
ttgctaagtcctttagatagccaatttgttattgcagctactgagtaaat |
15449070 |
T |
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