View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_low_13 (Length: 271)
Name: NF3935_low_13
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 52980560 - 52980327
Alignment:
| Q |
24 |
ttttaacttttttatttaaacaaatccaattcttatccacatccaaaatgttttccaatagcccatcacttttcattcttctccattcaatctcccacat |
123 |
Q |
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| T |
52980560 |
ttttaactttcttatttaaacaaatccaattcttatccacatccaaaatgttttccaatagcccatcacttttcattcttctccattcaatctcccgcat |
52980461 |
T |
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| Q |
124 |
gaaggccattgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaatca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52980460 |
gaaggccattgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaatca |
52980361 |
T |
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| Q |
224 |
aatacatgtacttttggtatgttgaattgatcat |
257 |
Q |
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||||||||||| |||||||||| ||||||||||| |
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| T |
52980360 |
aatacatgtacatttggtatgtagaattgatcat |
52980327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 14519450 - 14519217
Alignment:
| Q |
24 |
ttttaacttttttatttaaacaaatccaattcttatccacatccaaaatgttttccaatagcccatcacttttcattcttctccattcaatctcccacat |
123 |
Q |
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| T |
14519450 |
ttttaactttcttatttaaacaaatccaattcttatccacatccaaaatgtttttcaatagcccatcacttttcattcttctccattcaatctcccgcat |
14519351 |
T |
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| Q |
124 |
gaaggccattgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaatca |
223 |
Q |
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| T |
14519350 |
gaaggccattgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaatca |
14519251 |
T |
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| Q |
224 |
aatacatgtacttttggtatgttgaattgatcat |
257 |
Q |
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| T |
14519250 |
aatacatgtacatttggtatgtagaattgatcat |
14519217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 28385119 - 28385048
Alignment:
| Q |
153 |
tgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaatcaa |
224 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| |||||| |
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| T |
28385119 |
tgcaactacacttgtgttgtgtacatccttcataagggtttcccaacttctttggtttttgtattcaatcaa |
28385048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 28385228 - 28385173
Alignment:
| Q |
7 |
tcgaagaatatcctaaattttaacttttttatttaaacaaatccaattcttatcca |
62 |
Q |
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| T |
28385228 |
tcgaataatatccttatttctcacttttttatttaaacaaatccaattcttatcca |
28385173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 17502513 - 17502601
Alignment:
| Q |
133 |
tgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaat |
221 |
Q |
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| T |
17502513 |
tgatgttgggttttttcttctgcaattacacttgtgttgtgtacatcctttataagggtttctcaaattctttggtttttgtatttaat |
17502601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 17507988 - 17507900
Alignment:
| Q |
133 |
tgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaat |
221 |
Q |
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| T |
17507988 |
tgatgttgggttttttcttctgcaattacacttgtgttgtgtacatcctttataagggtttctcaaattctttggtttttgtatttaat |
17507900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 17545226 - 17545314
Alignment:
| Q |
133 |
tgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaat |
221 |
Q |
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| T |
17545226 |
tgatgttgggttttttcttctgcaattacacttgtgttgtgtacatcctttataagggtttctcaaattctttggtttttgtatttaat |
17545314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 17550701 - 17550613
Alignment:
| Q |
133 |
tgatgttgggtctcttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaat |
221 |
Q |
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||||||||||| | |||||||||| |||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
17550701 |
tgatgttgggttttttcttctgcaattacacttgtgttgtgtacatcctttataagggtttctcaaattctttggtttttgtatttaat |
17550613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 35411124 - 35411051
Alignment:
| Q |
147 |
ttcttctgcacctacacttgtgttgtgtgcatccttcataagggtttcctaatttctttggtttttgtatttaat |
221 |
Q |
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|||||||||| ||||| ||||||||||| |||||||| |||||||||| || || ||| ||||||||||||||| |
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| T |
35411124 |
ttcttctgcaactacagttgtgttgtgtacatccttcgcaagggtttcccaactt-ttttgtttttgtatttaat |
35411051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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