View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_low_16 (Length: 239)
Name: NF3935_low_16
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_low_16 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 243036 - 243257
Alignment:
| Q |
18 |
atttacgacataatggtaacatatcacagttcattttttataatcattattaaaagcaaataaaaagatgtagtaacaagttggatttttctgttattac |
117 |
Q |
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| T |
243036 |
atttacgacataatggtaacatatcacagttcattttttataatcattattaaaagcaaataaaaagatgtagtaacaagttggatttttctgttattac |
243135 |
T |
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| Q |
118 |
ccttgtatttgatttatttcgttattttgtttaggatacattaaggtcacatccaccagaaaataaacaaatgaaaagggctaacgtgataggggtatca |
217 |
Q |
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| T |
243136 |
ccttgtatttgatttattttgttattttgtttaggatacattaaggtcacatccagcagaaaataaacaaatgaaaagggctaacgtgataggggtatca |
243235 |
T |
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| Q |
218 |
acaatgacgataatattcctac |
239 |
Q |
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| T |
243236 |
acaatgacgataatattcctac |
243257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 222166 - 222017
Alignment:
| Q |
89 |
agtaacaagttggatttttctgttattacccttgtatttgatttatttcgttattttgtttaggatacattaaggtcacatccaccagaaaataaacaaa |
188 |
Q |
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| T |
222166 |
agtaacaagttggatttttcagttattacccttgtatttgattt-ttccattgttttgtttaggatacattaaagtcacatccagcagaaaataaacaaa |
222068 |
T |
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| Q |
189 |
tgaaaagggctaacgtgataggggtatcaacaatgacgataatattcctac |
239 |
Q |
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| T |
222067 |
tgaaaagggctaacgtgataggggtatcaacaatgacaatgatattcctac |
222017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 12029947 - 12029850
Alignment:
| Q |
142 |
ttttgtttaggatacattaaggtcacatccaccagaaaataaacaaatgaaaagggctaacgtgataggggtatcaacaatgacgataatattcctac |
239 |
Q |
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|||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| || ||||| |||| |
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| T |
12029947 |
ttttgtttaggacacattaaagtcacatccatcagaaaataaacaaatgaaaaaggctaacgtgataggggtgtcaacaatgacaatgatatttctac |
12029850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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