View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_low_2 (Length: 637)
Name: NF3935_low_2
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 134 - 572
Target Start/End: Complemental strand, 6956893 - 6956441
Alignment:
| Q |
134 |
agaaatatggtgaagatgttttgaaacgattctacacgttacactgcaatccaccagaaataccaatggagatgggaatcaaactcggcaaagatgttga |
233 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6956893 |
agaaatatggtgaagatgttttgaaaagattctacacgttacactgcaatccaccagaaataccaatagagatgggaatcaaactcggcaaagatgttga |
6956794 |
T |
|
| Q |
234 |
tgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaattttacattccttgtgggataagtaa |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6956793 |
tgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaatttgacattccttgtgggataagtaa |
6956694 |
T |
|
| Q |
334 |
gcaaattcatgaagaaaaaagtacatttgggtaattattcatgtttagtgaagcttcaatctcatagtgctcaaagaaacaaggaatagttgcattatcc |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956693 |
gcaaattcatgaagaaaaaagtacatttgggtaattattcacgtttagtgaagcttcaatctcatagtgctcaaagaaacaaggaatagttgcattatcc |
6956594 |
T |
|
| Q |
434 |
tcgtg--------------tgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgcttgaagatttgaagttaaatgaaactgaaaga |
519 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956593 |
tcgtgtgttaagttgagtatgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgcttgaagatttgaagttaaatgaaactgaaaga |
6956494 |
T |
|
| Q |
520 |
atgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956493 |
atgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
6956441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6958368 - 6958266
Alignment:
| Q |
1 |
agaaaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttacttgaaaatgaccatatcatagtaagataga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958368 |
agaaaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttacttgaaaatgaccatatcatagtaagataga |
6958269 |
T |
|
| Q |
101 |
ttc |
103 |
Q |
| |
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||| |
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| T |
6958268 |
ttc |
6958266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 19862473 - 19862420
Alignment:
| Q |
569 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
622 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19862473 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19862420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 19867042 - 19866989
Alignment:
| Q |
569 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
622 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
19867042 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19866989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 19871943 - 19871890
Alignment:
| Q |
569 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19871943 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19871890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 19876844 - 19876791
Alignment:
| Q |
569 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
19876844 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19876791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 36585725 - 36585672
Alignment:
| Q |
569 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
622 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36585725 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
36585672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 622
Target Start/End: Original strand, 48580658 - 48580708
Alignment:
| Q |
572 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
48580658 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
48580708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 569 - 622
Target Start/End: Original strand, 2064009 - 2064062
Alignment:
| Q |
569 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
622 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
2064009 |
ttgtgtgtacagacccatttaaactagcttttcttcttcggtttgcacgggttc |
2064062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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