View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_low_3 (Length: 398)
Name: NF3935_low_3
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 4119408 - 4119250
Alignment:
| Q |
224 |
ttctagactatgatgatcagtatgttcccaattcatcatatctcatgaaacgtcaccacaaagttcatcactggagacttctactaaaatgtcaccacaa |
323 |
Q |
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| T |
4119408 |
ttctagactatgatgatcagcatgttcccaattcatcatatctcctgaaacgtcaccacaaagttcatcaccggagacttctactaaaatgtcaccacaa |
4119309 |
T |
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| Q |
324 |
ccgtcttctcttgaaccatcaccacctcgccccgctccattgccacaagaacaaacatt |
382 |
Q |
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| T |
4119308 |
acgtcttctcttgaaccatcaccacctcgccccgctccattgccacaagaacatacatt |
4119250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 4119818 - 4119639
Alignment:
| Q |
47 |
cagttaacatatctcagact-caaggaaactgaattctctgaccaccgtatcggaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaacgc |
145 |
Q |
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| T |
4119818 |
cagttgacatatctcaggcttcaaggaaactgaattccctgaccactgtatcagaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaatgc |
4119719 |
T |
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| Q |
146 |
cttttcctcgttcgcctgtgatgtttcatatatatctcttgataagaattaattcaataaaaaa--tatatgaagttttatt |
225 |
Q |
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| T |
4119718 |
cttttcctcgttcgcctgtgatgtttcat--atatctcttgataagaactaattcaataaaaaatgtatatgaagttttatt |
4119639 |
T |
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