View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_low_5 (Length: 349)
Name: NF3935_low_5
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_low_5 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 166 - 349
Target Start/End: Complemental strand, 32592857 - 32592675
Alignment:
| Q |
166 |
tagcatcataatgataaaggcagctattatattcaatccattcatctagtggacaaactgacggaagaaactaatatcatttccattttgaataacaata |
265 |
Q |
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| T |
32592857 |
tagcatcataatgataaaggcagctattatattcaatccattcatctagtggacaaactgacggaagaaactaatatcatttccattttgaataacaata |
32592758 |
T |
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| Q |
266 |
ttaatttctttcttctacttgttctcttacaccttcaatgcatgttggccgatatcagaaatcatcaaattgcttgcatggttc |
349 |
Q |
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| T |
32592757 |
ttaatttc-ttcttctacttgttctcttacaccttgaatgcatgttggccgatatcagaaatcatcaaattgcttgcatggttc |
32592675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 32602963 - 32602878
Alignment:
| Q |
186 |
cagctattatattcaatccattcatctagtggacaaactgacggaagaaactaatatcatttccattttgaataacaatattaatt |
271 |
Q |
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| T |
32602963 |
cagctattatattcaattcattcatctagtggacaaactgacggaagaacaaaatatcatttccattttgaataacaatattaatt |
32602878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 32592967 - 32592907
Alignment:
| Q |
56 |
tgtcactctttacatgacataaaaagtatatatacgttactgaagattctattgttttgcc |
116 |
Q |
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| T |
32592967 |
tgtcactctttacatgacataaaaagtatatatacgttaatgaagattctattgttttgcc |
32592907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 32602878 - 32602834
Alignment:
| Q |
304 |
tgcatgttggccgatatcagaaatcatcaaattgcttgcatggtt |
348 |
Q |
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| T |
32602878 |
tgcatgttggccaatgtcagaaatcatcaaattgcttgcatggtt |
32602834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 32603085 - 32603046
Alignment:
| Q |
56 |
tgtcactctttacatgacataaaaagtatatatacgttac |
95 |
Q |
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||||||||||||||| |||||||||||||||||| ||||| |
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| T |
32603085 |
tgtcactctttacatcacataaaaagtatatatatgttac |
32603046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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