View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3935_low_6 (Length: 302)
Name: NF3935_low_6
Description: NF3935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3935_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 157 - 292
Target Start/End: Complemental strand, 34403284 - 34403149
Alignment:
| Q |
157 |
gattattacaaatcagggacatggagattctcgtcctcctatgatcccttccttccttgtatatttggtttcacagcttcattctccattgctgtgatcc |
256 |
Q |
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| T |
34403284 |
gattattacaaaacagggacatggagattctcgtcctcctatgatcccttccttccttgtatatttggtttcacagcttcattctccattgctgtgatcc |
34403185 |
T |
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| Q |
257 |
cattctcttctttctctctcctctttcatctgcatt |
292 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
34403184 |
cattcccttctttctctctcctctttcatctgcatt |
34403149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 34403432 - 34403394
Alignment:
| Q |
9 |
acatcatcataagctgacagcattttggattggatcctt |
47 |
Q |
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| T |
34403432 |
acatcatcataagctgacagcattttggattggatcctt |
34403394 |
T |
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