View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_high_10 (Length: 309)
Name: NF3936_high_10
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 12080562 - 12080305
Alignment:
| Q |
18 |
ttcctcaagtacccttttattcatatacccttttttgaataatgtt-annnnnnnncatgaattttgatgtaaagtttgaatttttattgcagattttag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12080562 |
ttcctcaagtacccttttattcatatacccttttttgaataatgttcattttttttcatgaattttgatgtaaagtttgaatttttattgcagatttaag |
12080463 |
T |
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| Q |
117 |
gtttgaggccaaaagggcaaaaggggttgtgctaaaagcttcttctggtgcattgaatgtgaattcaaagcaaagtgtttcagttgaaaaatccaaatcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12080462 |
gtttgaggccaaaagggcaaaaggggttgtgctaaaagcttcttctggtgcattgaatgtgaattcaaagcaaggtgtttcagttgaaaaatccaaatcc |
12080363 |
T |
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| Q |
217 |
aatgatccaattgttgttattgataactatgatagctttacctataatctttgtcagg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12080362 |
aatgatccaattgttgttattgataactatgatagctttacctataatctctgtcagg |
12080305 |
T |
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