View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_high_14 (Length: 260)
Name: NF3936_high_14
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 90 - 248
Target Start/End: Complemental strand, 33658491 - 33658333
Alignment:
| Q |
90 |
agatctaacaagaatctcaaataagatacacaaatttttgaagtataacttgtttgaagaaatttgatatgagactatctatttgtatacttattattag |
189 |
Q |
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| T |
33658491 |
agatctaacaagaatctcaaataagatacacaaatttttgaagtataacttgtttgaagaaatttgacatgagactatctatttgtatacttattattag |
33658392 |
T |
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| Q |
190 |
agtggttggcactgacaaatgtcacactgaaagcaacaagtgtgtgattattctctgct |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33658391 |
agtggttggcactgacaaatgtcacactgaaagcaacaagtgtgtgattattctttgct |
33658333 |
T |
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