View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_high_21 (Length: 229)
Name: NF3936_high_21
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 40077975 - 40078141
Alignment:
| Q |
44 |
gaagatgatgatgatattagcatttaattaataaaagtacttcctagatggtttcattggaacataatgttattctacaccatatctcttggtacaagac |
143 |
Q |
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| T |
40077975 |
gaagatgatgatgatattagcatttaattaataaaagtacttcctagatggtttcattggatcataatgttattctacaccatatctcttggtacaagac |
40078074 |
T |
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| Q |
144 |
caaaatgtaactttattttaatagtaatcaaaagtttcattatgtatgcttggtctcgagttcatta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40078075 |
caaaatgtaactttattttaatagtaatcaaaagtttcattatgtatgcttggtctcgagttcatta |
40078141 |
T |
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